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Cluster: HRGMv2_0971_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0971_21 HRGMv2_0971_21_7 6549 7316 - 1.A.23.4.2
TC HRGMv2_0971_21 HRGMv2_0971_21_8 7464 8258 - 3.A.1.34.1
TC HRGMv2_0971_21 HRGMv2_0971_21_9 8251 9174 - 3.A.1.34.1
TC HRGMv2_0971_21 HRGMv2_0971_21_10 9377 10357 - 3.A.1.34.1
pfam HRGMv2_0971_21 HRGMv2_0971_21_11 10517 11305 - WYL
pfam HRGMv2_0971_21 HRGMv2_0971_21_12 11564 12967 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0971_21 HRGMv2_0971_21_13 13147 13710 - 4.A.1.2.6
peptidase HRGMv2_0971_21 HRGMv2_0971_21_14 13957 14856 + S09.UPW
NULL(UNKNOWN) HRGMv2_0971_21 HRGMv2_0971_21_15 14904 15224 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0971_21 HRGMv2_0971_21_16 15346 17706 + 9.A.8.1.6
TC HRGMv2_0971_21 HRGMv2_0971_21_17 18021 19685 + 4.A.1.1.3
TF HRGMv2_0971_21 HRGMv2_0971_21_18 19748 20500 - HTH_6
CAZyme HRGMv2_0971_21 HRGMv2_0971_21_19 20676 22049 + GH4
NULL(UNKNOWN) HRGMv2_0971_21 HRGMv2_0971_21_20 22215 22967 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0971_21 HRGMv2_0971_21_21 23143 24339 + 2.A.1.2.18
CAZyme HRGMv2_0971_21 HRGMv2_0971_21_22 24493 25869 + GH13_20
Gene ID: HRGMv2_0971_21_7
Type: TC
Location: 6549 - 7316 (-)
Gene ID: HRGMv2_0971_21_8
Type: TC
Location: 7464 - 8258 (-)
Gene ID: HRGMv2_0971_21_9
Type: TC
Location: 8251 - 9174 (-)
Gene ID: HRGMv2_0971_21_10
Type: TC
Location: 9377 - 10357 (-)
Gene ID: HRGMv2_0971_21_11
Type: pfam
Location: 10517 - 11305 (-)
Gene ID: HRGMv2_0971_21_12
Type: pfam
Location: 11564 - 12967 (-)
Gene ID: HRGMv2_0971_21_13
Type: TC
Location: 13147 - 13710 (-)
Gene ID: HRGMv2_0971_21_14
Type: peptidase
Location: 13957 - 14856 (+)
Gene ID: HRGMv2_0971_21_15
Type:
Location: 14904 - 15224 (+)
Gene ID: HRGMv2_0971_21_16
Type: TC
Location: 15346 - 17706 (+)
Gene ID: HRGMv2_0971_21_17
Type: TC
Location: 18021 - 19685 (+)
Gene ID: HRGMv2_0971_21_18
Type: TF
Location: 19748 - 20500 (-)
Gene ID: HRGMv2_0971_21_19
Type: CAZyme
Location: 20676 - 22049 (+)
Gene ID: HRGMv2_0971_21_20
Type:
Location: 22215 - 22967 (+)
Gene ID: HRGMv2_0971_21_21
Type: TC
Location: 23143 - 24339 (+)
Gene ID: HRGMv2_0971_21_22
Type: CAZyme
Location: 24493 - 25869 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0971_21_19 vegan > omnivore 1.58291 0.00863
HRGMv2_0971_21_20 vegan > omnivore 1.81711 0.00863

🧭 Explore Read Mapping of CGC

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