Cluster: HRGMv2_0971_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0971
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0971_11 | HRGMv2_0971_11_46 | 56336 | 56824 | + | 4.A.6.1.9 |
| TC | HRGMv2_0971_11 | HRGMv2_0971_11_47 | 56897 | 57754 | + | 4.A.6.1.1 |
| TC | HRGMv2_0971_11 | HRGMv2_0971_11_48 | 57754 | 58581 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | HRGMv2_0971_11 | HRGMv2_0971_11_49 | 58777 | 59103 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0971_11 | HRGMv2_0971_11_50 | 59208 | 59648 | + | MarR |
| CAZyme | HRGMv2_0971_11 | HRGMv2_0971_11_51 | 60160 | 66573 | + | GH31_18 |
Gene ID: HRGMv2_0971_11_46
Type: TC
Location: 56336 - 56824 (+)
Type: TC
Location: 56336 - 56824 (+)
Gene ID: HRGMv2_0971_11_47
Type: TC
Location: 56897 - 57754 (+)
Type: TC
Location: 56897 - 57754 (+)
Gene ID: HRGMv2_0971_11_48
Type: TC
Location: 57754 - 58581 (+)
Type: TC
Location: 57754 - 58581 (+)
Gene ID: HRGMv2_0971_11_49
Type:
Location: 58777 - 59103 (+)
Type:
Location: 58777 - 59103 (+)
Gene ID: HRGMv2_0971_11_50
Type: TF
Location: 59208 - 59648 (+)
Type: TF
Location: 59208 - 59648 (+)
Gene ID: HRGMv2_0971_11_51
Type: CAZyme
Location: 60160 - 66573 (+)
Type: CAZyme
Location: 60160 - 66573 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp027671585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0971_11_51 | vegetarian > omnivore | 1.29155 | 0.03504 |
| HRGMv2_0971_11_51 | vegetarian > vegan | 2.08674 | 0.00181 |