Cluster: HRGMv2_0969_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: HRGMv2_0969
- CGC Family ID: CGCFAM_00014
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0969_2 | HRGMv2_0969_2_107 | 118748 | 120442 | + | 4.A.3.1.1 |
| STP | HRGMv2_0969_2 | HRGMv2_0969_2_108 | 120605 | 121000 | + | DeoRC |
| pfam | HRGMv2_0969_2 | HRGMv2_0969_2_109 | 121106 | 122338 | - | Fic |
| CAZyme | HRGMv2_0969_2 | HRGMv2_0969_2_110 | 122707 | 124128 | - | GH1 |
| TC | HRGMv2_0969_2 | HRGMv2_0969_2_111 | 124204 | 124767 | - | 4.A.3.1.1 |
| TC | HRGMv2_0969_2 | HRGMv2_0969_2_112 | 124721 | 125983 | - | 4.A.3.1.1 |
| TF | HRGMv2_0969_2 | HRGMv2_0969_2_113 | 126259 | 127269 | + | LacI |
| TC | HRGMv2_0969_2 | HRGMv2_0969_2_114 | 127607 | 129367 | - | 4.A.3.1.1 |
| CAZyme | HRGMv2_0969_2 | HRGMv2_0969_2_115 | 129544 | 130986 | - | GH1 |
| TF | HRGMv2_0969_2 | HRGMv2_0969_2_116 | 131328 | 132365 | + | LacI |
| CAZyme | HRGMv2_0969_2 | HRGMv2_0969_2_117 | 132643 | 134082 | - | GH1 |
| TC | HRGMv2_0969_2 | HRGMv2_0969_2_118 | 134149 | 135915 | - | 4.A.3.1.1 |
| TF | HRGMv2_0969_2 | HRGMv2_0969_2_119 | 136273 | 137277 | + | LacI |
| TC | HRGMv2_0969_2 | HRGMv2_0969_2_120 | 137492 | 137830 | + | 4.A.3.1.2 |
Gene ID: HRGMv2_0969_2_107
Type: TC
Location: 118748 - 120442 (+)
Type: TC
Location: 118748 - 120442 (+)
Gene ID: HRGMv2_0969_2_108
Type: STP
Location: 120605 - 121000 (+)
Type: STP
Location: 120605 - 121000 (+)
Gene ID: HRGMv2_0969_2_109
Type: pfam
Location: 121106 - 122338 (-)
Type: pfam
Location: 121106 - 122338 (-)
Gene ID: HRGMv2_0969_2_110
Type: CAZyme
Location: 122707 - 124128 (-)
Type: CAZyme
Location: 122707 - 124128 (-)
Gene ID: HRGMv2_0969_2_111
Type: TC
Location: 124204 - 124767 (-)
Type: TC
Location: 124204 - 124767 (-)
Gene ID: HRGMv2_0969_2_112
Type: TC
Location: 124721 - 125983 (-)
Type: TC
Location: 124721 - 125983 (-)
Gene ID: HRGMv2_0969_2_113
Type: TF
Location: 126259 - 127269 (+)
Type: TF
Location: 126259 - 127269 (+)
Gene ID: HRGMv2_0969_2_114
Type: TC
Location: 127607 - 129367 (-)
Type: TC
Location: 127607 - 129367 (-)
Gene ID: HRGMv2_0969_2_115
Type: CAZyme
Location: 129544 - 130986 (-)
Type: CAZyme
Location: 129544 - 130986 (-)
Gene ID: HRGMv2_0969_2_116
Type: TF
Location: 131328 - 132365 (+)
Type: TF
Location: 131328 - 132365 (+)
Gene ID: HRGMv2_0969_2_117
Type: CAZyme
Location: 132643 - 134082 (-)
Type: CAZyme
Location: 132643 - 134082 (-)
Gene ID: HRGMv2_0969_2_118
Type: TC
Location: 134149 - 135915 (-)
Type: TC
Location: 134149 - 135915 (-)
Gene ID: HRGMv2_0969_2_119
Type: TF
Location: 136273 - 137277 (+)
Type: TF
Location: 136273 - 137277 (+)
Gene ID: HRGMv2_0969_2_120
Type: TC
Location: 137492 - 137830 (+)
Type: TC
Location: 137492 - 137830 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.