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Cluster: HRGMv2_0967_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0967_8 HRGMv2_0967_8_28 33074 34243 - CE9
STP HRGMv2_0967_8 HRGMv2_0967_8_29 34362 35528 - SIS | SIS
TF HRGMv2_0967_8 HRGMv2_0967_8_30 35643 36374 - GntR
TC HRGMv2_0967_8 HRGMv2_0967_8_31 36559 37641 - 4.A.6.1.4
TC HRGMv2_0967_8 HRGMv2_0967_8_32 37631 38431 - 4.A.6.1.4
TC HRGMv2_0967_8 HRGMv2_0967_8_33 38522 39004 - 4.A.6.1.4
pfam HRGMv2_0967_8 HRGMv2_0967_8_34 39041 39322 - YajC
TC HRGMv2_0967_8 HRGMv2_0967_8_35 39322 39765 - 4.A.6.1.16
Gene ID: HRGMv2_0967_8_28
Type: CAZyme
Location: 33074 - 34243 (-)
Gene ID: HRGMv2_0967_8_29
Type: STP
Location: 34362 - 35528 (-)
Gene ID: HRGMv2_0967_8_30
Type: TF
Location: 35643 - 36374 (-)
Gene ID: HRGMv2_0967_8_31
Type: TC
Location: 36559 - 37641 (-)
Gene ID: HRGMv2_0967_8_32
Type: TC
Location: 37631 - 38431 (-)
Gene ID: HRGMv2_0967_8_33
Type: TC
Location: 38522 - 39004 (-)
Gene ID: HRGMv2_0967_8_34
Type: pfam
Location: 39041 - 39322 (-)
Gene ID: HRGMv2_0967_8_35
Type: TC
Location: 39322 - 39765 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0967_8_34 vegan > omnivore 1.05215 0.00566

🧭 Explore Read Mapping of CGC

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