dbCAN Logo

Cluster: HRGMv2_0965_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0965_5 HRGMv2_0965_5_38 45964 47133 - CE9
STP HRGMv2_0965_5 HRGMv2_0965_5_39 47251 48417 - SIS | SIS
TF HRGMv2_0965_5 HRGMv2_0965_5_40 48532 49263 - GntR
TC HRGMv2_0965_5 HRGMv2_0965_5_41 49449 50531 - 4.A.6.1.4
TC HRGMv2_0965_5 HRGMv2_0965_5_42 50521 51321 - 4.A.6.1.4
TC HRGMv2_0965_5 HRGMv2_0965_5_43 51412 51894 - 4.A.6.1.4
pfam HRGMv2_0965_5 HRGMv2_0965_5_44 51931 52212 - YajC
TC HRGMv2_0965_5 HRGMv2_0965_5_45 52212 52655 - 4.A.6.1.16
Gene ID: HRGMv2_0965_5_38
Type: CAZyme
Location: 45964 - 47133 (-)
Gene ID: HRGMv2_0965_5_39
Type: STP
Location: 47251 - 48417 (-)
Gene ID: HRGMv2_0965_5_40
Type: TF
Location: 48532 - 49263 (-)
Gene ID: HRGMv2_0965_5_41
Type: TC
Location: 49449 - 50531 (-)
Gene ID: HRGMv2_0965_5_42
Type: TC
Location: 50521 - 51321 (-)
Gene ID: HRGMv2_0965_5_43
Type: TC
Location: 51412 - 51894 (-)
Gene ID: HRGMv2_0965_5_44
Type: pfam
Location: 51931 - 52212 (-)
Gene ID: HRGMv2_0965_5_45
Type: TC
Location: 52212 - 52655 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0965_5_44 vegan > omnivore 1.00306 0.01057

🧭 Explore Read Mapping of CGC

← Back to Cluster List