Cluster: HRGMv2_0965_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0965
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0965_5 | HRGMv2_0965_5_15 | 18213 | 18551 | - | 4.A.3.1.2 |
| TF | HRGMv2_0965_5 | HRGMv2_0965_5_16 | 18766 | 19770 | - | LacI |
| TC | HRGMv2_0965_5 | HRGMv2_0965_5_17 | 20128 | 21903 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_0965_5 | HRGMv2_0965_5_18 | 21970 | 23409 | + | GH1 |
| TF | HRGMv2_0965_5 | HRGMv2_0965_5_19 | 23677 | 24714 | - | LacI |
| CAZyme | HRGMv2_0965_5 | HRGMv2_0965_5_20 | 25056 | 26498 | + | GH1 |
| TC | HRGMv2_0965_5 | HRGMv2_0965_5_21 | 26675 | 28435 | + | 4.A.3.1.1 |
| TF | HRGMv2_0965_5 | HRGMv2_0965_5_22 | 28849 | 29859 | - | LacI |
| TC | HRGMv2_0965_5 | HRGMv2_0965_5_23 | 30134 | 31912 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_0965_5 | HRGMv2_0965_5_24 | 31989 | 33410 | + | GH1 |
| pfam | HRGMv2_0965_5 | HRGMv2_0965_5_25 | 33777 | 35009 | + | Fic |
| STP | HRGMv2_0965_5 | HRGMv2_0965_5_26 | 35006 | 35386 | - | DeoRC |
| TC | HRGMv2_0965_5 | HRGMv2_0965_5_27 | 35549 | 37132 | - | 4.A.3.1.1 |
Gene ID: HRGMv2_0965_5_15
Type: TC
Location: 18213 - 18551 (-)
Type: TC
Location: 18213 - 18551 (-)
Gene ID: HRGMv2_0965_5_16
Type: TF
Location: 18766 - 19770 (-)
Type: TF
Location: 18766 - 19770 (-)
Gene ID: HRGMv2_0965_5_17
Type: TC
Location: 20128 - 21903 (+)
Type: TC
Location: 20128 - 21903 (+)
Gene ID: HRGMv2_0965_5_18
Type: CAZyme
Location: 21970 - 23409 (+)
Type: CAZyme
Location: 21970 - 23409 (+)
Gene ID: HRGMv2_0965_5_19
Type: TF
Location: 23677 - 24714 (-)
Type: TF
Location: 23677 - 24714 (-)
Gene ID: HRGMv2_0965_5_20
Type: CAZyme
Location: 25056 - 26498 (+)
Type: CAZyme
Location: 25056 - 26498 (+)
Gene ID: HRGMv2_0965_5_21
Type: TC
Location: 26675 - 28435 (+)
Type: TC
Location: 26675 - 28435 (+)
Gene ID: HRGMv2_0965_5_22
Type: TF
Location: 28849 - 29859 (-)
Type: TF
Location: 28849 - 29859 (-)
Gene ID: HRGMv2_0965_5_23
Type: TC
Location: 30134 - 31912 (+)
Type: TC
Location: 30134 - 31912 (+)
Gene ID: HRGMv2_0965_5_24
Type: CAZyme
Location: 31989 - 33410 (+)
Type: CAZyme
Location: 31989 - 33410 (+)
Gene ID: HRGMv2_0965_5_25
Type: pfam
Location: 33777 - 35009 (+)
Type: pfam
Location: 33777 - 35009 (+)
Gene ID: HRGMv2_0965_5_26
Type: STP
Location: 35006 - 35386 (-)
Type: STP
Location: 35006 - 35386 (-)
Gene ID: HRGMv2_0965_5_27
Type: TC
Location: 35549 - 37132 (-)
Type: TC
Location: 35549 - 37132 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0965_5_19 | vegetarian > omnivore | 1.06204 | 0.02242 |