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Cluster: HRGMv2_0964_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0964_11 HRGMv2_0964_11_3 2052 3452 + GH1
TC HRGMv2_0964_11 HRGMv2_0964_11_4 3588 4940 + 4.A.3.2.2
TC HRGMv2_0964_11 HRGMv2_0964_11_5 5093 5395 + 4.A.3.2.9
TC HRGMv2_0964_11 HRGMv2_0964_11_6 5405 5737 + 4.A.3.2.3
sulfatase HRGMv2_0964_11 HRGMv2_0964_11_7 5875 6546 + S1_11
TC HRGMv2_0964_11 HRGMv2_0964_11_8 6556 6864 + 4.A.3.2.3
pfam HRGMv2_0964_11 HRGMv2_0964_11_9 7051 8004 + ROK
pfam HRGMv2_0964_11 HRGMv2_0964_11_10 8170 9093 + DHH | DHHA2
TC HRGMv2_0964_11 HRGMv2_0964_11_11 9361 10719 + 2.A.33.1.1
Gene ID: HRGMv2_0964_11_3
Type: CAZyme
Location: 2052 - 3452 (+)
Gene ID: HRGMv2_0964_11_4
Type: TC
Location: 3588 - 4940 (+)
Gene ID: HRGMv2_0964_11_5
Type: TC
Location: 5093 - 5395 (+)
Gene ID: HRGMv2_0964_11_6
Type: TC
Location: 5405 - 5737 (+)
Gene ID: HRGMv2_0964_11_7
Type: sulfatase
Location: 5875 - 6546 (+)
Gene ID: HRGMv2_0964_11_8
Type: TC
Location: 6556 - 6864 (+)
Gene ID: HRGMv2_0964_11_9
Type: pfam
Location: 7051 - 8004 (+)
Gene ID: HRGMv2_0964_11_10
Type: pfam
Location: 8170 - 9093 (+)
Gene ID: HRGMv2_0964_11_11
Type: TC
Location: 9361 - 10719 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0964_11_5 vegan > omnivore 1.11633 0.01285

🧭 Explore Read Mapping of CGC

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