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Cluster: HRGMv2_0959_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0959_5 HRGMv2_0959_5_37 41714 42895 - GT4
pfam HRGMv2_0959_5 HRGMv2_0959_5_38 42895 44076 - Epimerase_2
pfam HRGMv2_0959_5 HRGMv2_0959_5_39 44081 45298 - Epimerase | Polysacc_synt_C
TC HRGMv2_0959_5 HRGMv2_0959_5_40 45300 46358 - 9.B.18.2.1
CAZyme HRGMv2_0959_5 HRGMv2_0959_5_41 46359 47135 - GT26
pfam HRGMv2_0959_5 HRGMv2_0959_5_42 47135 47383 - Bac_transf
TC HRGMv2_0959_5 HRGMv2_0959_5_43 47401 47865 - 9.B.18.1.2
Gene ID: HRGMv2_0959_5_37
Type: CAZyme
Location: 41714 - 42895 (-)
Gene ID: HRGMv2_0959_5_38
Type: pfam
Location: 42895 - 44076 (-)
Gene ID: HRGMv2_0959_5_39
Type: pfam
Location: 44081 - 45298 (-)
Gene ID: HRGMv2_0959_5_40
Type: TC
Location: 45300 - 46358 (-)
Gene ID: HRGMv2_0959_5_41
Type: CAZyme
Location: 46359 - 47135 (-)
Gene ID: HRGMv2_0959_5_42
Type: pfam
Location: 47135 - 47383 (-)
Gene ID: HRGMv2_0959_5_43
Type: TC
Location: 47401 - 47865 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0959_5_39 vegetarian > omnivore 1.36388 0.03761

🧭 Explore Read Mapping of CGC

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