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Cluster: HRGMv2_0959_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0959_13 HRGMv2_0959_13_22 28233 29660 + 4.A.1.2.11
CAZyme HRGMv2_0959_13 HRGMv2_0959_13_23 29871 31184 + GH140
TF HRGMv2_0959_13 HRGMv2_0959_13_24 31502 33046 + GerE
TC HRGMv2_0959_13 HRGMv2_0959_13_25 33188 35956 - 3.A.3.4.1
STP HRGMv2_0959_13 HRGMv2_0959_13_26 36394 37074 + Pribosyltran
TF HRGMv2_0959_13 HRGMv2_0959_13_27 37355 38209 - HTH_6
CAZyme HRGMv2_0959_13 HRGMv2_0959_13_28 38412 39860 + GH1
TC HRGMv2_0959_13 HRGMv2_0959_13_29 40012 40548 + 4.A.1.2.6
Gene ID: HRGMv2_0959_13_22
Type: TC
Location: 28233 - 29660 (+)
Gene ID: HRGMv2_0959_13_23
Type: CAZyme
Location: 29871 - 31184 (+)
Gene ID: HRGMv2_0959_13_24
Type: TF
Location: 31502 - 33046 (+)
Gene ID: HRGMv2_0959_13_25
Type: TC
Location: 33188 - 35956 (-)
Gene ID: HRGMv2_0959_13_26
Type: STP
Location: 36394 - 37074 (+)
Gene ID: HRGMv2_0959_13_27
Type: TF
Location: 37355 - 38209 (-)
Gene ID: HRGMv2_0959_13_28
Type: CAZyme
Location: 38412 - 39860 (+)
Gene ID: HRGMv2_0959_13_29
Type: TC
Location: 40012 - 40548 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0959_13_24 vegetarian > omnivore 1.02601 0.03761

🧭 Explore Read Mapping of CGC

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