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Cluster: HRGMv2_0959_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0959_8 HRGMv2_0959_8_48 55621 56790 - CE9
STP HRGMv2_0959_8 HRGMv2_0959_8_49 56908 58074 - SIS | SIS
TF HRGMv2_0959_8 HRGMv2_0959_8_50 58189 58920 - GntR
TC HRGMv2_0959_8 HRGMv2_0959_8_51 59106 60188 - 4.A.6.1.4
TC HRGMv2_0959_8 HRGMv2_0959_8_52 60178 60978 - 4.A.6.1.4
TC HRGMv2_0959_8 HRGMv2_0959_8_53 61069 61551 - 4.A.6.1.4
pfam HRGMv2_0959_8 HRGMv2_0959_8_54 61588 61869 - YajC
TC HRGMv2_0959_8 HRGMv2_0959_8_55 61869 62312 - 4.A.6.1.16
Gene ID: HRGMv2_0959_8_48
Type: CAZyme
Location: 55621 - 56790 (-)
Gene ID: HRGMv2_0959_8_49
Type: STP
Location: 56908 - 58074 (-)
Gene ID: HRGMv2_0959_8_50
Type: TF
Location: 58189 - 58920 (-)
Gene ID: HRGMv2_0959_8_51
Type: TC
Location: 59106 - 60188 (-)
Gene ID: HRGMv2_0959_8_52
Type: TC
Location: 60178 - 60978 (-)
Gene ID: HRGMv2_0959_8_53
Type: TC
Location: 61069 - 61551 (-)
Gene ID: HRGMv2_0959_8_54
Type: pfam
Location: 61588 - 61869 (-)
Gene ID: HRGMv2_0959_8_55
Type: TC
Location: 61869 - 62312 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0959_8_54 vegan > omnivore 1.07984 0.00863

🧭 Explore Read Mapping of CGC

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