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Cluster: HRGMv2_0959_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0959_8 HRGMv2_0959_8_25 27526 27864 - 4.A.3.1.2
TF HRGMv2_0959_8 HRGMv2_0959_8_26 28079 29083 - LacI
TC HRGMv2_0959_8 HRGMv2_0959_8_27 29441 31216 + 4.A.3.1.1
CAZyme HRGMv2_0959_8 HRGMv2_0959_8_28 31283 32722 + GH1
TF HRGMv2_0959_8 HRGMv2_0959_8_29 32984 34021 - LacI
CAZyme HRGMv2_0959_8 HRGMv2_0959_8_30 34363 35805 + GH1
TC HRGMv2_0959_8 HRGMv2_0959_8_31 35982 37742 + 4.A.3.1.1
TF HRGMv2_0959_8 HRGMv2_0959_8_32 38156 39166 - LacI
TC HRGMv2_0959_8 HRGMv2_0959_8_33 39442 41220 + 4.A.3.1.1
CAZyme HRGMv2_0959_8 HRGMv2_0959_8_34 41296 42717 + GH1
Gene ID: HRGMv2_0959_8_25
Type: TC
Location: 27526 - 27864 (-)
Gene ID: HRGMv2_0959_8_26
Type: TF
Location: 28079 - 29083 (-)
Gene ID: HRGMv2_0959_8_27
Type: TC
Location: 29441 - 31216 (+)
Gene ID: HRGMv2_0959_8_28
Type: CAZyme
Location: 31283 - 32722 (+)
Gene ID: HRGMv2_0959_8_29
Type: TF
Location: 32984 - 34021 (-)
Gene ID: HRGMv2_0959_8_30
Type: CAZyme
Location: 34363 - 35805 (+)
Gene ID: HRGMv2_0959_8_31
Type: TC
Location: 35982 - 37742 (+)
Gene ID: HRGMv2_0959_8_32
Type: TF
Location: 38156 - 39166 (-)
Gene ID: HRGMv2_0959_8_33
Type: TC
Location: 39442 - 41220 (+)
Gene ID: HRGMv2_0959_8_34
Type: CAZyme
Location: 41296 - 42717 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0959_8_29 vegetarian > omnivore 1.02290 0.03761

🧭 Explore Read Mapping of CGC

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