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Cluster: HRGMv2_0956_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0956_3 HRGMv2_0956_3_49 52069 53865 + GH35
TC HRGMv2_0956_3 HRGMv2_0956_3_50 53868 54332 + 4.A.6.1.18
TC HRGMv2_0956_3 HRGMv2_0956_3_51 54426 55313 + 4.A.6.1.18
TC HRGMv2_0956_3 HRGMv2_0956_3_52 55303 56142 + 4.A.6.1.18
NULL(UNKNOWN) HRGMv2_0956_3 HRGMv2_0956_3_53 56331 56954 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0956_3 HRGMv2_0956_3_54 57036 57464 + 4.A.6.1.8
TF HRGMv2_0956_3 HRGMv2_0956_3_55 57552 58286 + GntR
STP HRGMv2_0956_3 HRGMv2_0956_3_56 58398 59564 + SIS | SIS
CAZyme HRGMv2_0956_3 HRGMv2_0956_3_57 59682 60851 + CE9
Gene ID: HRGMv2_0956_3_49
Type: CAZyme
Location: 52069 - 53865 (+)
Gene ID: HRGMv2_0956_3_50
Type: TC
Location: 53868 - 54332 (+)
Gene ID: HRGMv2_0956_3_51
Type: TC
Location: 54426 - 55313 (+)
Gene ID: HRGMv2_0956_3_52
Type: TC
Location: 55303 - 56142 (+)
Gene ID: HRGMv2_0956_3_53
Type:
Location: 56331 - 56954 (+)
Gene ID: HRGMv2_0956_3_54
Type: TC
Location: 57036 - 57464 (+)
Gene ID: HRGMv2_0956_3_55
Type: TF
Location: 57552 - 58286 (+)
Gene ID: HRGMv2_0956_3_56
Type: STP
Location: 58398 - 59564 (+)
Gene ID: HRGMv2_0956_3_57
Type: CAZyme
Location: 59682 - 60851 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0956_3_49 vegetarian > vegan 2.87729 0.02369
HRGMv2_0956_3_50 vegetarian > vegan 3.52169 0.01283
HRGMv2_0956_3_52 vegetarian > vegan 2.64797 0.01283

🧭 Explore Read Mapping of CGC

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