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Cluster: HRGMv2_0956_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0956_3 HRGMv2_0956_3_16 19218 20618 + GH1
TC HRGMv2_0956_3 HRGMv2_0956_3_17 20739 22082 + 4.A.3.2.9
TC HRGMv2_0956_3 HRGMv2_0956_3_18 22244 22546 + 4.A.3.2.9
TC HRGMv2_0956_3 HRGMv2_0956_3_19 22556 22888 + 4.A.3.2.3
STP HRGMv2_0956_3 HRGMv2_0956_3_20 23130 24083 + Glucokinase
pfam HRGMv2_0956_3 HRGMv2_0956_3_21 24252 25175 + DHH | DHHA2
TC HRGMv2_0956_3 HRGMv2_0956_3_22 25443 26801 + 2.A.33.1.1
Gene ID: HRGMv2_0956_3_16
Type: CAZyme
Location: 19218 - 20618 (+)
Gene ID: HRGMv2_0956_3_17
Type: TC
Location: 20739 - 22082 (+)
Gene ID: HRGMv2_0956_3_18
Type: TC
Location: 22244 - 22546 (+)
Gene ID: HRGMv2_0956_3_19
Type: TC
Location: 22556 - 22888 (+)
Gene ID: HRGMv2_0956_3_20
Type: STP
Location: 23130 - 24083 (+)
Gene ID: HRGMv2_0956_3_21
Type: pfam
Location: 24252 - 25175 (+)
Gene ID: HRGMv2_0956_3_22
Type: TC
Location: 25443 - 26801 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0956_3_18 vegan > omnivore 1.11767 0.01057

🧭 Explore Read Mapping of CGC

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