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Cluster: HRGMv2_0954_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0954_5 HRGMv2_0954_5_11 15705 17081 - GH13_20
TC HRGMv2_0954_5 HRGMv2_0954_5_12 17235 18431 - 2.A.1.2.18
TC HRGMv2_0954_5 HRGMv2_0954_5_13 18552 20912 - 9.A.8.1.6
peptidase HRGMv2_0954_5 HRGMv2_0954_5_14 21386 22285 - S09.UPW
TC HRGMv2_0954_5 HRGMv2_0954_5_15 22529 23092 + 4.A.1.2.6
pfam HRGMv2_0954_5 HRGMv2_0954_5_16 23274 24677 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0954_5 HRGMv2_0954_5_17 24936 25721 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0954_5 HRGMv2_0954_5_18 25882 26862 + 3.A.1.34.1
TC HRGMv2_0954_5 HRGMv2_0954_5_19 27066 27989 + 3.A.1.34.1
TC HRGMv2_0954_5 HRGMv2_0954_5_20 27982 28776 + 3.A.1.34.1
pfam HRGMv2_0954_5 HRGMv2_0954_5_21 28935 30959 + Metallophos | 5_nucleotid_C
TC HRGMv2_0954_5 HRGMv2_0954_5_22 31089 31856 + 1.A.23.4.2
pfam HRGMv2_0954_5 HRGMv2_0954_5_23 31949 33865 + Bmp
pfam HRGMv2_0954_5 HRGMv2_0954_5_24 33862 34572 + Metallophos | Metallophos_2
TC HRGMv2_0954_5 HRGMv2_0954_5_25 34698 35405 - 1.C.82.1.1
Gene ID: HRGMv2_0954_5_11
Type: CAZyme
Location: 15705 - 17081 (-)
Gene ID: HRGMv2_0954_5_12
Type: TC
Location: 17235 - 18431 (-)
Gene ID: HRGMv2_0954_5_13
Type: TC
Location: 18552 - 20912 (-)
Gene ID: HRGMv2_0954_5_14
Type: peptidase
Location: 21386 - 22285 (-)
Gene ID: HRGMv2_0954_5_15
Type: TC
Location: 22529 - 23092 (+)
Gene ID: HRGMv2_0954_5_16
Type: pfam
Location: 23274 - 24677 (+)
Gene ID: HRGMv2_0954_5_17
Type:
Location: 24936 - 25721 (+)
Gene ID: HRGMv2_0954_5_18
Type: TC
Location: 25882 - 26862 (+)
Gene ID: HRGMv2_0954_5_19
Type: TC
Location: 27066 - 27989 (+)
Gene ID: HRGMv2_0954_5_20
Type: TC
Location: 27982 - 28776 (+)
Gene ID: HRGMv2_0954_5_21
Type: pfam
Location: 28935 - 30959 (+)
Gene ID: HRGMv2_0954_5_22
Type: TC
Location: 31089 - 31856 (+)
Gene ID: HRGMv2_0954_5_23
Type: pfam
Location: 31949 - 33865 (+)
Gene ID: HRGMv2_0954_5_24
Type: pfam
Location: 33862 - 34572 (+)
Gene ID: HRGMv2_0954_5_25
Type: TC
Location: 34698 - 35405 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0954_5_21 vegan > omnivore 1.75453 0.01057
HRGMv2_0954_5_21 vegetarian > omnivore 1.32089 0.01287

🧭 Explore Read Mapping of CGC

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