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Cluster: HRGMv2_0954_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0954_1 HRGMv2_0954_1_95 91234 92928 + 4.A.3.1.1
CAZyme HRGMv2_0954_1 HRGMv2_0954_1_96 93924 95345 - GH1
TC HRGMv2_0954_1 HRGMv2_0954_1_97 95421 97199 - 4.A.3.1.1
TF HRGMv2_0954_1 HRGMv2_0954_1_98 97476 98486 + LacI
TC HRGMv2_0954_1 HRGMv2_0954_1_99 98900 100660 - 4.A.3.1.1
CAZyme HRGMv2_0954_1 HRGMv2_0954_1_100 100837 102279 - GH1
TF HRGMv2_0954_1 HRGMv2_0954_1_101 102621 103658 + LacI
CAZyme HRGMv2_0954_1 HRGMv2_0954_1_102 103936 105375 - GH1
TC HRGMv2_0954_1 HRGMv2_0954_1_103 105442 107217 - 4.A.3.1.1
TF HRGMv2_0954_1 HRGMv2_0954_1_104 107575 108579 + LacI
TC HRGMv2_0954_1 HRGMv2_0954_1_105 108794 109132 + 4.A.3.1.2
Gene ID: HRGMv2_0954_1_95
Type: TC
Location: 91234 - 92928 (+)
Gene ID: HRGMv2_0954_1_96
Type: CAZyme
Location: 93924 - 95345 (-)
Gene ID: HRGMv2_0954_1_97
Type: TC
Location: 95421 - 97199 (-)
Gene ID: HRGMv2_0954_1_98
Type: TF
Location: 97476 - 98486 (+)
Gene ID: HRGMv2_0954_1_99
Type: TC
Location: 98900 - 100660 (-)
Gene ID: HRGMv2_0954_1_100
Type: CAZyme
Location: 100837 - 102279 (-)
Gene ID: HRGMv2_0954_1_101
Type: TF
Location: 102621 - 103658 (+)
Gene ID: HRGMv2_0954_1_102
Type: CAZyme
Location: 103936 - 105375 (-)
Gene ID: HRGMv2_0954_1_103
Type: TC
Location: 105442 - 107217 (-)
Gene ID: HRGMv2_0954_1_104
Type: TF
Location: 107575 - 108579 (+)
Gene ID: HRGMv2_0954_1_105
Type: TC
Location: 108794 - 109132 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0954_1_101 vegetarian > omnivore 1.02644 0.01571

🧭 Explore Read Mapping of CGC

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