Cluster: HRGMv2_0954_CGC15
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0954
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0954_28 | HRGMv2_0954_28_13 | 12350 | 13792 | + | 3.A.1.8.1 |
| TC | HRGMv2_0954_28 | HRGMv2_0954_28_14 | 13796 | 14866 | + | 3.A.1.1.3 |
| pfam | HRGMv2_0954_28 | HRGMv2_0954_28_15 | 15296 | 16579 | + | HGD-D |
| TC | HRGMv2_0954_28 | HRGMv2_0954_28_16 | 16764 | 18374 | + | 3.A.1.5.11 |
| TC | HRGMv2_0954_28 | HRGMv2_0954_28_17 | 18463 | 19416 | + | 3.A.1.5.39 |
| TC | HRGMv2_0954_28 | HRGMv2_0954_28_18 | 19413 | 20243 | + | 3.A.1.5.39 |
| TC | HRGMv2_0954_28 | HRGMv2_0954_28_19 | 20247 | 21242 | + | 3.A.1.5.37 |
| TC | HRGMv2_0954_28 | HRGMv2_0954_28_20 | 21232 | 22017 | + | 3.A.1.5.36 |
| pfam | HRGMv2_0954_28 | HRGMv2_0954_28_21 | 22094 | 23257 | + | HGD-D |
| pfam | HRGMv2_0954_28 | HRGMv2_0954_28_22 | 23412 | 24176 | + | BcrAD_BadFG |
| CAZyme | HRGMv2_0954_28 | HRGMv2_0954_28_23 | 24191 | 25408 | + | GT4 |
Gene ID: HRGMv2_0954_28_13
Type: TC
Location: 12350 - 13792 (+)
Type: TC
Location: 12350 - 13792 (+)
Gene ID: HRGMv2_0954_28_14
Type: TC
Location: 13796 - 14866 (+)
Type: TC
Location: 13796 - 14866 (+)
Gene ID: HRGMv2_0954_28_15
Type: pfam
Location: 15296 - 16579 (+)
Type: pfam
Location: 15296 - 16579 (+)
Gene ID: HRGMv2_0954_28_16
Type: TC
Location: 16764 - 18374 (+)
Type: TC
Location: 16764 - 18374 (+)
Gene ID: HRGMv2_0954_28_17
Type: TC
Location: 18463 - 19416 (+)
Type: TC
Location: 18463 - 19416 (+)
Gene ID: HRGMv2_0954_28_18
Type: TC
Location: 19413 - 20243 (+)
Type: TC
Location: 19413 - 20243 (+)
Gene ID: HRGMv2_0954_28_19
Type: TC
Location: 20247 - 21242 (+)
Type: TC
Location: 20247 - 21242 (+)
Gene ID: HRGMv2_0954_28_20
Type: TC
Location: 21232 - 22017 (+)
Type: TC
Location: 21232 - 22017 (+)
Gene ID: HRGMv2_0954_28_21
Type: pfam
Location: 22094 - 23257 (+)
Type: pfam
Location: 22094 - 23257 (+)
Gene ID: HRGMv2_0954_28_22
Type: pfam
Location: 23412 - 24176 (+)
Type: pfam
Location: 23412 - 24176 (+)
Gene ID: HRGMv2_0954_28_23
Type: CAZyme
Location: 24191 - 25408 (+)
Type: CAZyme
Location: 24191 - 25408 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958429025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0954_28_16 | vegan > omnivore | 3.37573 | 0.01057 |
| HRGMv2_0954_28_16 | vegetarian > omnivore | 1.09314 | 0.01571 |
| HRGMv2_0954_28_17 | vegan > omnivore | 2.91014 | 0.01057 |
| HRGMv2_0954_28_17 | vegetarian > omnivore | 1.28675 | 0.01571 |
| HRGMv2_0954_28_18 | vegan > omnivore | 3.07608 | 0.01057 |
| HRGMv2_0954_28_18 | vegetarian > omnivore | 1.30906 | 0.01571 |
| HRGMv2_0954_28_20 | vegan > omnivore | 2.49590 | 0.01057 |
| HRGMv2_0954_28_23 | vegan > omnivore | 1.65938 | 0.01057 |