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Cluster: HRGMv2_0953_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0953_23 HRGMv2_0953_23_5 3438 3881 + 4.A.6.1.16
pfam HRGMv2_0953_23 HRGMv2_0953_23_6 3881 4162 + YajC
TC HRGMv2_0953_23 HRGMv2_0953_23_7 4199 4681 + 4.A.6.1.4
TC HRGMv2_0953_23 HRGMv2_0953_23_8 4772 5572 + 4.A.6.1.4
TC HRGMv2_0953_23 HRGMv2_0953_23_9 5562 6644 + 4.A.6.1.4
TF HRGMv2_0953_23 HRGMv2_0953_23_10 6830 7561 + GntR
STP HRGMv2_0953_23 HRGMv2_0953_23_11 7676 8842 + SIS | SIS
CAZyme HRGMv2_0953_23 HRGMv2_0953_23_12 8960 10129 + CE9
Gene ID: HRGMv2_0953_23_5
Type: TC
Location: 3438 - 3881 (+)
Gene ID: HRGMv2_0953_23_6
Type: pfam
Location: 3881 - 4162 (+)
Gene ID: HRGMv2_0953_23_7
Type: TC
Location: 4199 - 4681 (+)
Gene ID: HRGMv2_0953_23_8
Type: TC
Location: 4772 - 5572 (+)
Gene ID: HRGMv2_0953_23_9
Type: TC
Location: 5562 - 6644 (+)
Gene ID: HRGMv2_0953_23_10
Type: TF
Location: 6830 - 7561 (+)
Gene ID: HRGMv2_0953_23_11
Type: STP
Location: 7676 - 8842 (+)
Gene ID: HRGMv2_0953_23_12
Type: CAZyme
Location: 8960 - 10129 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0953_23_6 vegan > omnivore 1.05072 0.00701

🧭 Explore Read Mapping of CGC

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