Cluster: HRGMv2_0953_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0953
- CGC Family ID: CGCFAM_02643
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0953_197 | HRGMv2_0953_197_1 | 170 | 1222 | + | 3.A.1.135.6 |
| NULL(UNKNOWN) | HRGMv2_0953_197 | HRGMv2_0953_197_2 | 1317 | 1706 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0953_197 | HRGMv2_0953_197_3 | 1798 | 2070 | - | 8.A.8.1.6 |
| CAZyme | HRGMv2_0953_197 | HRGMv2_0953_197_4 | 2149 | 3003 | - | GH1 |
Gene ID: HRGMv2_0953_197_1
Type: TC
Location: 170 - 1222 (+)
Type: TC
Location: 170 - 1222 (+)
Gene ID: HRGMv2_0953_197_2
Type:
Location: 1317 - 1706 (-)
Type:
Location: 1317 - 1706 (-)
Gene ID: HRGMv2_0953_197_3
Type: TC
Location: 1798 - 2070 (-)
Type: TC
Location: 1798 - 2070 (-)
Gene ID: HRGMv2_0953_197_4
Type: CAZyme
Location: 2149 - 3003 (-)
Type: CAZyme
Location: 2149 - 3003 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900764415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.