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Cluster: HRGMv2_0951_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0951_3 HRGMv2_0951_3_39 46422 46760 - 4.A.3.1.2
TF HRGMv2_0951_3 HRGMv2_0951_3_40 46975 47979 - LacI
TC HRGMv2_0951_3 HRGMv2_0951_3_41 48337 48537 + 4.A.3.1.2
TC HRGMv2_0951_3 HRGMv2_0951_3_42 48556 50103 + 4.A.3.1.1
CAZyme HRGMv2_0951_3 HRGMv2_0951_3_43 50170 51609 + GH1
TF HRGMv2_0951_3 HRGMv2_0951_3_44 51877 52914 - LacI
CAZyme HRGMv2_0951_3 HRGMv2_0951_3_45 53256 54698 + GH1
TC HRGMv2_0951_3 HRGMv2_0951_3_46 54875 56635 + 4.A.3.1.1
TF HRGMv2_0951_3 HRGMv2_0951_3_47 56972 57982 - LacI
TC HRGMv2_0951_3 HRGMv2_0951_3_48 58235 60013 + 4.A.3.1.1
CAZyme HRGMv2_0951_3 HRGMv2_0951_3_49 60089 61510 + GH1
pfam HRGMv2_0951_3 HRGMv2_0951_3_50 61878 63110 + Fic
STP HRGMv2_0951_3 HRGMv2_0951_3_51 63164 63487 - DeoRC
TC HRGMv2_0951_3 HRGMv2_0951_3_52 63650 65344 - 4.A.3.1.1
Gene ID: HRGMv2_0951_3_39
Type: TC
Location: 46422 - 46760 (-)
Gene ID: HRGMv2_0951_3_40
Type: TF
Location: 46975 - 47979 (-)
Gene ID: HRGMv2_0951_3_41
Type: TC
Location: 48337 - 48537 (+)
Gene ID: HRGMv2_0951_3_42
Type: TC
Location: 48556 - 50103 (+)
Gene ID: HRGMv2_0951_3_43
Type: CAZyme
Location: 50170 - 51609 (+)
Gene ID: HRGMv2_0951_3_44
Type: TF
Location: 51877 - 52914 (-)
Gene ID: HRGMv2_0951_3_45
Type: CAZyme
Location: 53256 - 54698 (+)
Gene ID: HRGMv2_0951_3_46
Type: TC
Location: 54875 - 56635 (+)
Gene ID: HRGMv2_0951_3_47
Type: TF
Location: 56972 - 57982 (-)
Gene ID: HRGMv2_0951_3_48
Type: TC
Location: 58235 - 60013 (+)
Gene ID: HRGMv2_0951_3_49
Type: CAZyme
Location: 60089 - 61510 (+)
Gene ID: HRGMv2_0951_3_50
Type: pfam
Location: 61878 - 63110 (+)
Gene ID: HRGMv2_0951_3_51
Type: STP
Location: 63164 - 63487 (-)
Gene ID: HRGMv2_0951_3_52
Type: TC
Location: 63650 - 65344 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0951_3_44 vegetarian > omnivore 1.08546 0.03181

🧭 Explore Read Mapping of CGC

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