Cluster: HRGMv2_0951_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0951
- CGC Family ID: CGCFAM_00230
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0951_2 | HRGMv2_0951_2_141 | 154251 | 155627 | - | GH13_20 |
| TC | HRGMv2_0951_2 | HRGMv2_0951_2_142 | 155781 | 156977 | - | 2.A.1.2.18 |
| NULL(UNKNOWN) | HRGMv2_0951_2 | HRGMv2_0951_2_143 | 157153 | 157905 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0951_2 | HRGMv2_0951_2_144 | 158071 | 159444 | - | GH4 |
| TF | HRGMv2_0951_2 | HRGMv2_0951_2_145 | 159620 | 160372 | + | HTH_6 |
| TC | HRGMv2_0951_2 | HRGMv2_0951_2_146 | 160435 | 161847 | - | 4.A.1.1.3 |
Gene ID: HRGMv2_0951_2_141
Type: CAZyme
Location: 154251 - 155627 (-)
Type: CAZyme
Location: 154251 - 155627 (-)
Gene ID: HRGMv2_0951_2_142
Type: TC
Location: 155781 - 156977 (-)
Type: TC
Location: 155781 - 156977 (-)
Gene ID: HRGMv2_0951_2_143
Type:
Location: 157153 - 157905 (-)
Type:
Location: 157153 - 157905 (-)
Gene ID: HRGMv2_0951_2_144
Type: CAZyme
Location: 158071 - 159444 (-)
Type: CAZyme
Location: 158071 - 159444 (-)
Gene ID: HRGMv2_0951_2_145
Type: TF
Location: 159620 - 160372 (+)
Type: TF
Location: 159620 - 160372 (+)
Gene ID: HRGMv2_0951_2_146
Type: TC
Location: 160435 - 161847 (-)
Type: TC
Location: 160435 - 161847 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937950325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0951_2_143 | vegan > omnivore | 1.81708 | 0.00863 |
| HRGMv2_0951_2_144 | vegan > omnivore | 1.59248 | 0.00863 |
| HRGMv2_0951_2_146 | vegan > omnivore | 1.01826 | 0.00863 |