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Cluster: HRGMv2_0950_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0950_3 HRGMv2_0950_3_106 126188 127357 - CE9
STP HRGMv2_0950_3 HRGMv2_0950_3_107 127475 128641 - SIS | SIS
TF HRGMv2_0950_3 HRGMv2_0950_3_108 128756 129487 - GntR
TC HRGMv2_0950_3 HRGMv2_0950_3_109 129673 130755 - 4.A.6.1.4
TC HRGMv2_0950_3 HRGMv2_0950_3_110 130745 131545 - 4.A.6.1.4
TC HRGMv2_0950_3 HRGMv2_0950_3_111 131636 132118 - 4.A.6.1.4
pfam HRGMv2_0950_3 HRGMv2_0950_3_112 132155 132436 - YajC
TC HRGMv2_0950_3 HRGMv2_0950_3_113 132436 132879 - 4.A.6.1.16
Gene ID: HRGMv2_0950_3_106
Type: CAZyme
Location: 126188 - 127357 (-)
Gene ID: HRGMv2_0950_3_107
Type: STP
Location: 127475 - 128641 (-)
Gene ID: HRGMv2_0950_3_108
Type: TF
Location: 128756 - 129487 (-)
Gene ID: HRGMv2_0950_3_109
Type: TC
Location: 129673 - 130755 (-)
Gene ID: HRGMv2_0950_3_110
Type: TC
Location: 130745 - 131545 (-)
Gene ID: HRGMv2_0950_3_111
Type: TC
Location: 131636 - 132118 (-)
Gene ID: HRGMv2_0950_3_112
Type: pfam
Location: 132155 - 132436 (-)
Gene ID: HRGMv2_0950_3_113
Type: TC
Location: 132436 - 132879 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0950_3_112 vegan > omnivore 1.03615 0.00566

🧭 Explore Read Mapping of CGC

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