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Cluster: HRGMv2_0949_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0949_14 HRGMv2_0949_14_22 24689 26089 + GH1
TC HRGMv2_0949_14 HRGMv2_0949_14_23 26210 27562 + 4.A.3.2.2
TC HRGMv2_0949_14 HRGMv2_0949_14_24 27716 28018 + 4.A.3.2.9
TC HRGMv2_0949_14 HRGMv2_0949_14_25 28028 28360 + 4.A.3.2.3
STP HRGMv2_0949_14 HRGMv2_0949_14_26 28602 29555 + Glucokinase
pfam HRGMv2_0949_14 HRGMv2_0949_14_27 29678 30601 + DHH | DHHA2
TC HRGMv2_0949_14 HRGMv2_0949_14_28 30871 32229 + 2.A.33.1.1
Gene ID: HRGMv2_0949_14_22
Type: CAZyme
Location: 24689 - 26089 (+)
Gene ID: HRGMv2_0949_14_23
Type: TC
Location: 26210 - 27562 (+)
Gene ID: HRGMv2_0949_14_24
Type: TC
Location: 27716 - 28018 (+)
Gene ID: HRGMv2_0949_14_25
Type: TC
Location: 28028 - 28360 (+)
Gene ID: HRGMv2_0949_14_26
Type: STP
Location: 28602 - 29555 (+)
Gene ID: HRGMv2_0949_14_27
Type: pfam
Location: 29678 - 30601 (+)
Gene ID: HRGMv2_0949_14_28
Type: TC
Location: 30871 - 32229 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0949_14_24 vegan > omnivore 1.10431 0.00455

🧭 Explore Read Mapping of CGC

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