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Cluster: HRGMv2_0949_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0949_3 HRGMv2_0949_3_26 30462 31550 - 3.D.1.4.2
pfam HRGMv2_0949_3 HRGMv2_0949_3_27 31556 32257 - Complex1_30kDa
TC HRGMv2_0949_3 HRGMv2_0949_3_28 32257 32844 - 3.D.1.4.2
TC HRGMv2_0949_3 HRGMv2_0949_3_29 32857 35739 - 3.D.1.4.2
TF HRGMv2_0949_3 HRGMv2_0949_3_30 36024 36428 - 0039939
STP HRGMv2_0949_3 HRGMv2_0949_3_31 36869 38899 - Pyr_redox_2
TC HRGMv2_0949_3 HRGMv2_0949_3_32 40016 41578 + 4.A.1.1.16
NULL(UNKNOWN) HRGMv2_0949_3 HRGMv2_0949_3_33 41617 41886 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0949_3 HRGMv2_0949_3_34 41906 43234 + GH4
TF HRGMv2_0949_3 HRGMv2_0949_3_35 43307 44164 - HTH_6
CAZyme HRGMv2_0949_3 HRGMv2_0949_3_36 44781 46208 - GH140
CAZyme HRGMv2_0949_3 HRGMv2_0949_3_37 46278 47522 - GH1
pfam HRGMv2_0949_3 HRGMv2_0949_3_38 47615 48370 - YdjC
TF HRGMv2_0949_3 HRGMv2_0949_3_39 48601 50499 + HTH_11
CAZyme HRGMv2_0949_3 HRGMv2_0949_3_40 50515 51927 + GH1
pfam HRGMv2_0949_3 HRGMv2_0949_3_41 52024 52383 + PTS_IIA
TC HRGMv2_0949_3 HRGMv2_0949_3_42 52638 53807 - 4.A.3.2.2
TC HRGMv2_0949_3 HRGMv2_0949_3_43 53916 54221 - 4.A.3.2.6
Gene ID: HRGMv2_0949_3_26
Type: TC
Location: 30462 - 31550 (-)
Gene ID: HRGMv2_0949_3_27
Type: pfam
Location: 31556 - 32257 (-)
Gene ID: HRGMv2_0949_3_28
Type: TC
Location: 32257 - 32844 (-)
Gene ID: HRGMv2_0949_3_29
Type: TC
Location: 32857 - 35739 (-)
Gene ID: HRGMv2_0949_3_30
Type: TF
Location: 36024 - 36428 (-)
Gene ID: HRGMv2_0949_3_31
Type: STP
Location: 36869 - 38899 (-)
Gene ID: HRGMv2_0949_3_32
Type: TC
Location: 40016 - 41578 (+)
Gene ID: HRGMv2_0949_3_33
Type:
Location: 41617 - 41886 (+)
Gene ID: HRGMv2_0949_3_34
Type: CAZyme
Location: 41906 - 43234 (+)
Gene ID: HRGMv2_0949_3_35
Type: TF
Location: 43307 - 44164 (-)
Gene ID: HRGMv2_0949_3_36
Type: CAZyme
Location: 44781 - 46208 (-)
Gene ID: HRGMv2_0949_3_37
Type: CAZyme
Location: 46278 - 47522 (-)
Gene ID: HRGMv2_0949_3_38
Type: pfam
Location: 47615 - 48370 (-)
Gene ID: HRGMv2_0949_3_39
Type: TF
Location: 48601 - 50499 (+)
Gene ID: HRGMv2_0949_3_40
Type: CAZyme
Location: 50515 - 51927 (+)
Gene ID: HRGMv2_0949_3_41
Type: pfam
Location: 52024 - 52383 (+)
Gene ID: HRGMv2_0949_3_42
Type: TC
Location: 52638 - 53807 (-)
Gene ID: HRGMv2_0949_3_43
Type: TC
Location: 53916 - 54221 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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