dbCAN Logo

Cluster: HRGMv2_0949_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0949_40 HRGMv2_0949_40_1 76 1836 - 4.A.3.1.1
CAZyme HRGMv2_0949_40 HRGMv2_0949_40_2 2013 3455 - GH1
TF HRGMv2_0949_40 HRGMv2_0949_40_3 3797 4834 + LacI
CAZyme HRGMv2_0949_40 HRGMv2_0949_40_4 5102 6541 - GH1
TC HRGMv2_0949_40 HRGMv2_0949_40_5 6608 8383 - 4.A.3.1.1
TF HRGMv2_0949_40 HRGMv2_0949_40_6 8741 9745 + LacI
TC HRGMv2_0949_40 HRGMv2_0949_40_7 9960 10298 + 4.A.3.1.2
Gene ID: HRGMv2_0949_40_1
Type: TC
Location: 76 - 1836 (-)
Gene ID: HRGMv2_0949_40_2
Type: CAZyme
Location: 2013 - 3455 (-)
Gene ID: HRGMv2_0949_40_3
Type: TF
Location: 3797 - 4834 (+)
Gene ID: HRGMv2_0949_40_4
Type: CAZyme
Location: 5102 - 6541 (-)
Gene ID: HRGMv2_0949_40_5
Type: TC
Location: 6608 - 8383 (-)
Gene ID: HRGMv2_0949_40_6
Type: TF
Location: 8741 - 9745 (+)
Gene ID: HRGMv2_0949_40_7
Type: TC
Location: 9960 - 10298 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0949_40_3 vegetarian > omnivore 1.04652 0.02242

🧭 Explore Read Mapping of CGC

← Back to Cluster List