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Cluster: HRGMv2_0949_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0949_29 HRGMv2_0949_29_3 1653 2096 + 4.A.6.1.16
pfam HRGMv2_0949_29 HRGMv2_0949_29_4 2096 2377 + YajC
TC HRGMv2_0949_29 HRGMv2_0949_29_5 2414 2896 + 4.A.6.1.4
TC HRGMv2_0949_29 HRGMv2_0949_29_6 2987 3787 + 4.A.6.1.4
TC HRGMv2_0949_29 HRGMv2_0949_29_7 3777 4859 + 4.A.6.1.4
TF HRGMv2_0949_29 HRGMv2_0949_29_8 5045 5776 + GntR
STP HRGMv2_0949_29 HRGMv2_0949_29_9 5891 7057 + SIS | SIS
CAZyme HRGMv2_0949_29 HRGMv2_0949_29_10 7174 8343 + CE9
Gene ID: HRGMv2_0949_29_3
Type: TC
Location: 1653 - 2096 (+)
Gene ID: HRGMv2_0949_29_4
Type: pfam
Location: 2096 - 2377 (+)
Gene ID: HRGMv2_0949_29_5
Type: TC
Location: 2414 - 2896 (+)
Gene ID: HRGMv2_0949_29_6
Type: TC
Location: 2987 - 3787 (+)
Gene ID: HRGMv2_0949_29_7
Type: TC
Location: 3777 - 4859 (+)
Gene ID: HRGMv2_0949_29_8
Type: TF
Location: 5045 - 5776 (+)
Gene ID: HRGMv2_0949_29_9
Type: STP
Location: 5891 - 7057 (+)
Gene ID: HRGMv2_0949_29_10
Type: CAZyme
Location: 7174 - 8343 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0949_29_3 vegan > omnivore 1.01990 0.00455
HRGMv2_0949_29_4 vegan > omnivore 1.13381 0.00455

🧭 Explore Read Mapping of CGC

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