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Cluster: HRGMv2_0948_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0948_47 HRGMv2_0948_47_3 2366 4816 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_0948_47 HRGMv2_0948_47_4 4838 4957 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0948_47 HRGMv2_0948_47_5 5041 5760 + GntR
TC HRGMv2_0948_47 HRGMv2_0948_47_6 6067 7383 + 3.A.1.1.45
TC HRGMv2_0948_47 HRGMv2_0948_47_7 7471 8325 + 3.A.1.1.45
TC HRGMv2_0948_47 HRGMv2_0948_47_8 8325 9164 + 3.A.1.1.45
TC HRGMv2_0948_47 HRGMv2_0948_47_9 9233 10432 + 3.A.1.1.22
CAZyme HRGMv2_0948_47 HRGMv2_0948_47_10 11050 13317 - GT35
CAZyme HRGMv2_0948_47 HRGMv2_0948_47_11 13447 14952 - GH77
Gene ID: HRGMv2_0948_47_3
Type: TC
Location: 2366 - 4816 (-)
Gene ID: HRGMv2_0948_47_4
Type:
Location: 4838 - 4957 (+)
Gene ID: HRGMv2_0948_47_5
Type: TF
Location: 5041 - 5760 (+)
Gene ID: HRGMv2_0948_47_6
Type: TC
Location: 6067 - 7383 (+)
Gene ID: HRGMv2_0948_47_7
Type: TC
Location: 7471 - 8325 (+)
Gene ID: HRGMv2_0948_47_8
Type: TC
Location: 8325 - 9164 (+)
Gene ID: HRGMv2_0948_47_9
Type: TC
Location: 9233 - 10432 (+)
Gene ID: HRGMv2_0948_47_10
Type: CAZyme
Location: 11050 - 13317 (-)
Gene ID: HRGMv2_0948_47_11
Type: CAZyme
Location: 13447 - 14952 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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