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Cluster: HRGMv2_0948_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0948_43 HRGMv2_0948_43_12 10457 11626 - CE9
STP HRGMv2_0948_43 HRGMv2_0948_43_13 11745 12911 - SIS | SIS
TF HRGMv2_0948_43 HRGMv2_0948_43_14 13026 13757 - GntR
TC HRGMv2_0948_43 HRGMv2_0948_43_15 13944 15026 - 4.A.6.1.4
TC HRGMv2_0948_43 HRGMv2_0948_43_16 15016 15816 - 4.A.6.1.4
TC HRGMv2_0948_43 HRGMv2_0948_43_17 15907 16389 - 4.A.6.1.4
pfam HRGMv2_0948_43 HRGMv2_0948_43_18 16426 16707 - YajC
TC HRGMv2_0948_43 HRGMv2_0948_43_19 16707 17150 - 4.A.6.1.16
Gene ID: HRGMv2_0948_43_12
Type: CAZyme
Location: 10457 - 11626 (-)
Gene ID: HRGMv2_0948_43_13
Type: STP
Location: 11745 - 12911 (-)
Gene ID: HRGMv2_0948_43_14
Type: TF
Location: 13026 - 13757 (-)
Gene ID: HRGMv2_0948_43_15
Type: TC
Location: 13944 - 15026 (-)
Gene ID: HRGMv2_0948_43_16
Type: TC
Location: 15016 - 15816 (-)
Gene ID: HRGMv2_0948_43_17
Type: TC
Location: 15907 - 16389 (-)
Gene ID: HRGMv2_0948_43_18
Type: pfam
Location: 16426 - 16707 (-)
Gene ID: HRGMv2_0948_43_19
Type: TC
Location: 16707 - 17150 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0948_43_18 vegan > omnivore 1.04018 0.00863

🧭 Explore Read Mapping of CGC

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