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Cluster: HRGMv2_0947_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0947_23 HRGMv2_0947_23_6 4514 5935 - GH1
TC HRGMv2_0947_23 HRGMv2_0947_23_7 6011 7768 - 4.A.3.1.1
TF HRGMv2_0947_23 HRGMv2_0947_23_8 8044 9054 + LacI
TC HRGMv2_0947_23 HRGMv2_0947_23_9 9228 10988 - 4.A.3.1.1
CAZyme HRGMv2_0947_23 HRGMv2_0947_23_10 11165 12607 - GH1
TF HRGMv2_0947_23 HRGMv2_0947_23_11 12949 13986 + LacI
CAZyme HRGMv2_0947_23 HRGMv2_0947_23_12 14191 15630 - GH1
TC HRGMv2_0947_23 HRGMv2_0947_23_13 15697 17472 - 4.A.3.1.1
TF HRGMv2_0947_23 HRGMv2_0947_23_14 17830 18834 + LacI
TC HRGMv2_0947_23 HRGMv2_0947_23_15 19049 19387 + 4.A.3.1.2
Gene ID: HRGMv2_0947_23_6
Type: CAZyme
Location: 4514 - 5935 (-)
Gene ID: HRGMv2_0947_23_7
Type: TC
Location: 6011 - 7768 (-)
Gene ID: HRGMv2_0947_23_8
Type: TF
Location: 8044 - 9054 (+)
Gene ID: HRGMv2_0947_23_9
Type: TC
Location: 9228 - 10988 (-)
Gene ID: HRGMv2_0947_23_10
Type: CAZyme
Location: 11165 - 12607 (-)
Gene ID: HRGMv2_0947_23_11
Type: TF
Location: 12949 - 13986 (+)
Gene ID: HRGMv2_0947_23_12
Type: CAZyme
Location: 14191 - 15630 (-)
Gene ID: HRGMv2_0947_23_13
Type: TC
Location: 15697 - 17472 (-)
Gene ID: HRGMv2_0947_23_14
Type: TF
Location: 17830 - 18834 (+)
Gene ID: HRGMv2_0947_23_15
Type: TC
Location: 19049 - 19387 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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