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Cluster: HRGMv2_0947_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0947_1 HRGMv2_0947_1_39 38340 39740 + GH1
TC HRGMv2_0947_1 HRGMv2_0947_1_40 39861 41204 + 4.A.3.2.9
TC HRGMv2_0947_1 HRGMv2_0947_1_41 41365 41667 + 4.A.3.2.9
TC HRGMv2_0947_1 HRGMv2_0947_1_42 41677 42009 + 4.A.3.2.3
pfam HRGMv2_0947_1 HRGMv2_0947_1_43 42251 43204 + ROK
pfam HRGMv2_0947_1 HRGMv2_0947_1_44 43380 44303 + DHH | DHHA2
TC HRGMv2_0947_1 HRGMv2_0947_1_45 44571 45929 + 2.A.33.1.1
Gene ID: HRGMv2_0947_1_39
Type: CAZyme
Location: 38340 - 39740 (+)
Gene ID: HRGMv2_0947_1_40
Type: TC
Location: 39861 - 41204 (+)
Gene ID: HRGMv2_0947_1_41
Type: TC
Location: 41365 - 41667 (+)
Gene ID: HRGMv2_0947_1_42
Type: TC
Location: 41677 - 42009 (+)
Gene ID: HRGMv2_0947_1_43
Type: pfam
Location: 42251 - 43204 (+)
Gene ID: HRGMv2_0947_1_44
Type: pfam
Location: 43380 - 44303 (+)
Gene ID: HRGMv2_0947_1_45
Type: TC
Location: 44571 - 45929 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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