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Cluster: HRGMv2_0946_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0946_20 HRGMv2_0946_20_4 3850 5271 - GH1
TC HRGMv2_0946_20 HRGMv2_0946_20_5 5347 7110 - 4.A.3.1.1
TF HRGMv2_0946_20 HRGMv2_0946_20_6 7395 8396 + LacI
TC HRGMv2_0946_20 HRGMv2_0946_20_7 8734 10494 - 4.A.3.1.1
CAZyme HRGMv2_0946_20 HRGMv2_0946_20_8 10670 12112 - GH1
TF HRGMv2_0946_20 HRGMv2_0946_20_9 12454 13491 + LacI
CAZyme HRGMv2_0946_20 HRGMv2_0946_20_10 13755 15194 - GH1
TC HRGMv2_0946_20 HRGMv2_0946_20_11 15261 17027 - 4.A.3.1.1
TF HRGMv2_0946_20 HRGMv2_0946_20_12 17385 18389 + LacI
TC HRGMv2_0946_20 HRGMv2_0946_20_13 18604 18942 + 4.A.3.1.2
Gene ID: HRGMv2_0946_20_4
Type: CAZyme
Location: 3850 - 5271 (-)
Gene ID: HRGMv2_0946_20_5
Type: TC
Location: 5347 - 7110 (-)
Gene ID: HRGMv2_0946_20_6
Type: TF
Location: 7395 - 8396 (+)
Gene ID: HRGMv2_0946_20_7
Type: TC
Location: 8734 - 10494 (-)
Gene ID: HRGMv2_0946_20_8
Type: CAZyme
Location: 10670 - 12112 (-)
Gene ID: HRGMv2_0946_20_9
Type: TF
Location: 12454 - 13491 (+)
Gene ID: HRGMv2_0946_20_10
Type: CAZyme
Location: 13755 - 15194 (-)
Gene ID: HRGMv2_0946_20_11
Type: TC
Location: 15261 - 17027 (-)
Gene ID: HRGMv2_0946_20_12
Type: TF
Location: 17385 - 18389 (+)
Gene ID: HRGMv2_0946_20_13
Type: TC
Location: 18604 - 18942 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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