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Cluster: HRGMv2_0945_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0945_33 HRGMv2_0945_33_7 5552 6928 - GH13_20
TC HRGMv2_0945_33 HRGMv2_0945_33_8 7082 8278 - 2.A.1.2.18
TC HRGMv2_0945_33 HRGMv2_0945_33_9 8399 10759 - 9.A.8.1.6
peptidase HRGMv2_0945_33 HRGMv2_0945_33_10 11232 12131 - S09.UPW
TC HRGMv2_0945_33 HRGMv2_0945_33_11 12375 12938 + 4.A.1.2.6
pfam HRGMv2_0945_33 HRGMv2_0945_33_12 13120 14523 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0945_33 HRGMv2_0945_33_13 14782 15567 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0945_33 HRGMv2_0945_33_14 15728 16708 + 3.A.1.34.1
TC HRGMv2_0945_33 HRGMv2_0945_33_15 16912 17835 + 3.A.1.34.1
TC HRGMv2_0945_33 HRGMv2_0945_33_16 17828 18613 + 3.A.1.34.1
Gene ID: HRGMv2_0945_33_7
Type: CAZyme
Location: 5552 - 6928 (-)
Gene ID: HRGMv2_0945_33_8
Type: TC
Location: 7082 - 8278 (-)
Gene ID: HRGMv2_0945_33_9
Type: TC
Location: 8399 - 10759 (-)
Gene ID: HRGMv2_0945_33_10
Type: peptidase
Location: 11232 - 12131 (-)
Gene ID: HRGMv2_0945_33_11
Type: TC
Location: 12375 - 12938 (+)
Gene ID: HRGMv2_0945_33_12
Type: pfam
Location: 13120 - 14523 (+)
Gene ID: HRGMv2_0945_33_13
Type:
Location: 14782 - 15567 (+)
Gene ID: HRGMv2_0945_33_14
Type: TC
Location: 15728 - 16708 (+)
Gene ID: HRGMv2_0945_33_15
Type: TC
Location: 16912 - 17835 (+)
Gene ID: HRGMv2_0945_33_16
Type: TC
Location: 17828 - 18613 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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