Cluster: HRGMv2_0944_CGC14
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: HRGMv2_0944
- CGC Family ID: CGCFAM_00014
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0944_25 | HRGMv2_0944_25_6 | 5089 | 5427 | - | 4.A.3.1.2 |
| TF | HRGMv2_0944_25 | HRGMv2_0944_25_7 | 5642 | 6646 | - | LacI |
| TC | HRGMv2_0944_25 | HRGMv2_0944_25_8 | 7004 | 8770 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_0944_25 | HRGMv2_0944_25_9 | 8798 | 10276 | + | GH1 |
| TF | HRGMv2_0944_25 | HRGMv2_0944_25_10 | 10538 | 11575 | - | LacI |
| CAZyme | HRGMv2_0944_25 | HRGMv2_0944_25_11 | 11917 | 13359 | + | GH1 |
| TC | HRGMv2_0944_25 | HRGMv2_0944_25_12 | 13536 | 15296 | + | 4.A.3.1.1 |
| TF | HRGMv2_0944_25 | HRGMv2_0944_25_13 | 15630 | 16640 | - | LacI |
| TC | HRGMv2_0944_25 | HRGMv2_0944_25_14 | 16916 | 18694 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_0944_25 | HRGMv2_0944_25_15 | 18770 | 20191 | + | GH1 |
| NULL(UNKNOWN) | HRGMv2_0944_25 | HRGMv2_0944_25_16 | 20567 | 20833 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0944_25 | HRGMv2_0944_25_17 | 20823 | 21128 | + | ParE_toxin |
| TC | HRGMv2_0944_25 | HRGMv2_0944_25_18 | 21489 | 23183 | - | 4.A.3.1.1 |
Gene ID: HRGMv2_0944_25_6
Type: TC
Location: 5089 - 5427 (-)
Type: TC
Location: 5089 - 5427 (-)
Gene ID: HRGMv2_0944_25_7
Type: TF
Location: 5642 - 6646 (-)
Type: TF
Location: 5642 - 6646 (-)
Gene ID: HRGMv2_0944_25_8
Type: TC
Location: 7004 - 8770 (+)
Type: TC
Location: 7004 - 8770 (+)
Gene ID: HRGMv2_0944_25_9
Type: CAZyme
Location: 8798 - 10276 (+)
Type: CAZyme
Location: 8798 - 10276 (+)
Gene ID: HRGMv2_0944_25_10
Type: TF
Location: 10538 - 11575 (-)
Type: TF
Location: 10538 - 11575 (-)
Gene ID: HRGMv2_0944_25_11
Type: CAZyme
Location: 11917 - 13359 (+)
Type: CAZyme
Location: 11917 - 13359 (+)
Gene ID: HRGMv2_0944_25_12
Type: TC
Location: 13536 - 15296 (+)
Type: TC
Location: 13536 - 15296 (+)
Gene ID: HRGMv2_0944_25_13
Type: TF
Location: 15630 - 16640 (-)
Type: TF
Location: 15630 - 16640 (-)
Gene ID: HRGMv2_0944_25_14
Type: TC
Location: 16916 - 18694 (+)
Type: TC
Location: 16916 - 18694 (+)
Gene ID: HRGMv2_0944_25_15
Type: CAZyme
Location: 18770 - 20191 (+)
Type: CAZyme
Location: 18770 - 20191 (+)
Gene ID: HRGMv2_0944_25_16
Type:
Location: 20567 - 20833 (+)
Type:
Location: 20567 - 20833 (+)
Gene ID: HRGMv2_0944_25_17
Type: pfam
Location: 20823 - 21128 (+)
Type: pfam
Location: 20823 - 21128 (+)
Gene ID: HRGMv2_0944_25_18
Type: TC
Location: 21489 - 23183 (-)
Type: TC
Location: 21489 - 23183 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.