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Cluster: HRGMv2_0944_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0944_1 HRGMv2_0944_1_4 3083 5533 - 4.A.1.1.8
TF HRGMv2_0944_1 HRGMv2_0944_1_5 5763 6482 + GntR
TC HRGMv2_0944_1 HRGMv2_0944_1_6 6789 8105 + 3.A.1.1.45
TC HRGMv2_0944_1 HRGMv2_0944_1_7 8193 9047 + 3.A.1.1.45
TC HRGMv2_0944_1 HRGMv2_0944_1_8 9047 9886 + 3.A.1.1.45
TC HRGMv2_0944_1 HRGMv2_0944_1_9 9955 11154 + 3.A.1.1.22
CAZyme HRGMv2_0944_1 HRGMv2_0944_1_10 11528 13795 - GT35
CAZyme HRGMv2_0944_1 HRGMv2_0944_1_11 13924 15429 - GH77
Gene ID: HRGMv2_0944_1_4
Type: TC
Location: 3083 - 5533 (-)
Gene ID: HRGMv2_0944_1_5
Type: TF
Location: 5763 - 6482 (+)
Gene ID: HRGMv2_0944_1_6
Type: TC
Location: 6789 - 8105 (+)
Gene ID: HRGMv2_0944_1_7
Type: TC
Location: 8193 - 9047 (+)
Gene ID: HRGMv2_0944_1_8
Type: TC
Location: 9047 - 9886 (+)
Gene ID: HRGMv2_0944_1_9
Type: TC
Location: 9955 - 11154 (+)
Gene ID: HRGMv2_0944_1_10
Type: CAZyme
Location: 11528 - 13795 (-)
Gene ID: HRGMv2_0944_1_11
Type: CAZyme
Location: 13924 - 15429 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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