dbCAN HGM

Cluster: HRGMv2_0943_CGC9

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_0943_13	HRGMv2_0943_13_5	3720	5705	-	GT2
CAZyme	HRGMv2_0943_13	HRGMv2_0943_13_6	5901	7037	+	GT2
TC	HRGMv2_0943_13	HRGMv2_0943_13_7	7195	8007	+	3.A.1.103.4
TC	HRGMv2_0943_13	HRGMv2_0943_13_8	8017	8772	+	3.A.1.103.1
CAZyme	HRGMv2_0943_13	HRGMv2_0943_13_9	8774	9883	+	GT2
CAZyme	HRGMv2_0943_13	HRGMv2_0943_13_10	9892	10950	+	GT2
CAZyme	HRGMv2_0943_13	HRGMv2_0943_13_11	10972	12207	+	GT4
pfam	HRGMv2_0943_13	HRGMv2_0943_13_12	12264	12941	+	IU_nuc_hydro
CAZyme	HRGMv2_0943_13	HRGMv2_0943_13_13	12816	13778	-	GT81
TC	HRGMv2_0943_13	HRGMv2_0943_13_14	13919	14761	+	3.A.1.103.5

Gene ID: HRGMv2_0943_13_5
Type: CAZyme
Location: 3720 - 5705 (-)

Gene ID: HRGMv2_0943_13_6
Type: CAZyme
Location: 5901 - 7037 (+)

Gene ID: HRGMv2_0943_13_7
Type: TC
Location: 7195 - 8007 (+)

Gene ID: HRGMv2_0943_13_8
Type: TC
Location: 8017 - 8772 (+)

Gene ID: HRGMv2_0943_13_9
Type: CAZyme
Location: 8774 - 9883 (+)

Gene ID: HRGMv2_0943_13_10
Type: CAZyme
Location: 9892 - 10950 (+)

Gene ID: HRGMv2_0943_13_11
Type: CAZyme
Location: 10972 - 12207 (+)

Gene ID: HRGMv2_0943_13_12
Type: pfam
Location: 12264 - 12941 (+)

Gene ID: HRGMv2_0943_13_13
Type: CAZyme
Location: 12816 - 13778 (-)

Gene ID: HRGMv2_0943_13_14
Type: TC
Location: 13919 - 14761 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0943_13_6	vegetarian > omnivore	1.34036	0.03181
HRGMv2_0943_13_6	vegetarian > vegan	2.32321	0.03544
HRGMv2_0943_13_8	vegetarian > omnivore	1.35412	0.03181
HRGMv2_0943_13_9	vegetarian > omnivore	2.37550	0.03181
HRGMv2_0943_13_11	vegetarian > omnivore	2.32729	0.03181
HRGMv2_0943_13_11	vegetarian > vegan	3.08321	0.02773