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Cluster: HRGMv2_0943_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0943_10 HRGMv2_0943_10_2 1731 3152 - GH1
TC HRGMv2_0943_10 HRGMv2_0943_10_3 3228 5006 - 4.A.3.1.1
TF HRGMv2_0943_10 HRGMv2_0943_10_4 5282 6292 + LacI
TC HRGMv2_0943_10 HRGMv2_0943_10_5 6630 8390 - 4.A.3.1.1
CAZyme HRGMv2_0943_10 HRGMv2_0943_10_6 8567 10009 - GH1
TF HRGMv2_0943_10 HRGMv2_0943_10_7 10351 11388 + LacI
CAZyme HRGMv2_0943_10 HRGMv2_0943_10_8 11666 13105 - GH1
TC HRGMv2_0943_10 HRGMv2_0943_10_9 13172 14080 - 4.A.3.1.1
TC HRGMv2_0943_10 HRGMv2_0943_10_10 14096 14947 - 4.A.3.1.1
TF HRGMv2_0943_10 HRGMv2_0943_10_11 15305 16309 + LacI
TC HRGMv2_0943_10 HRGMv2_0943_10_12 16524 16862 + 4.A.3.1.2
Gene ID: HRGMv2_0943_10_2
Type: CAZyme
Location: 1731 - 3152 (-)
Gene ID: HRGMv2_0943_10_3
Type: TC
Location: 3228 - 5006 (-)
Gene ID: HRGMv2_0943_10_4
Type: TF
Location: 5282 - 6292 (+)
Gene ID: HRGMv2_0943_10_5
Type: TC
Location: 6630 - 8390 (-)
Gene ID: HRGMv2_0943_10_6
Type: CAZyme
Location: 8567 - 10009 (-)
Gene ID: HRGMv2_0943_10_7
Type: TF
Location: 10351 - 11388 (+)
Gene ID: HRGMv2_0943_10_8
Type: CAZyme
Location: 11666 - 13105 (-)
Gene ID: HRGMv2_0943_10_9
Type: TC
Location: 13172 - 14080 (-)
Gene ID: HRGMv2_0943_10_10
Type: TC
Location: 14096 - 14947 (-)
Gene ID: HRGMv2_0943_10_11
Type: TF
Location: 15305 - 16309 (+)
Gene ID: HRGMv2_0943_10_12
Type: TC
Location: 16524 - 16862 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0943_10_7 vegetarian > omnivore 1.02197 0.03181

🧭 Explore Read Mapping of CGC

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