Cluster: HRGMv2_0942_CGC8
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0942
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0942_5 | HRGMv2_0942_5_45 | 57502 | 59493 | - | GT2 |
| CAZyme | HRGMv2_0942_5 | HRGMv2_0942_5_46 | 59689 | 60825 | + | GT2 |
| TC | HRGMv2_0942_5 | HRGMv2_0942_5_47 | 60983 | 61795 | + | 3.A.1.103.4 |
| TC | HRGMv2_0942_5 | HRGMv2_0942_5_48 | 61805 | 62560 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_0942_5 | HRGMv2_0942_5_49 | 62562 | 63818 | + | GT2 |
| CAZyme | HRGMv2_0942_5 | HRGMv2_0942_5_50 | 63858 | 64919 | + | GT2 |
| CAZyme | HRGMv2_0942_5 | HRGMv2_0942_5_51 | 64941 | 66176 | + | GT4 |
| pfam | HRGMv2_0942_5 | HRGMv2_0942_5_52 | 66233 | 66910 | + | IU_nuc_hydro |
| CAZyme | HRGMv2_0942_5 | HRGMv2_0942_5_53 | 66785 | 67747 | - | GT81 |
| TC | HRGMv2_0942_5 | HRGMv2_0942_5_54 | 67870 | 68712 | + | 3.A.1.103.5 |
Gene ID: HRGMv2_0942_5_45
Type: CAZyme
Location: 57502 - 59493 (-)
Type: CAZyme
Location: 57502 - 59493 (-)
Gene ID: HRGMv2_0942_5_46
Type: CAZyme
Location: 59689 - 60825 (+)
Type: CAZyme
Location: 59689 - 60825 (+)
Gene ID: HRGMv2_0942_5_47
Type: TC
Location: 60983 - 61795 (+)
Type: TC
Location: 60983 - 61795 (+)
Gene ID: HRGMv2_0942_5_48
Type: TC
Location: 61805 - 62560 (+)
Type: TC
Location: 61805 - 62560 (+)
Gene ID: HRGMv2_0942_5_49
Type: CAZyme
Location: 62562 - 63818 (+)
Type: CAZyme
Location: 62562 - 63818 (+)
Gene ID: HRGMv2_0942_5_50
Type: CAZyme
Location: 63858 - 64919 (+)
Type: CAZyme
Location: 63858 - 64919 (+)
Gene ID: HRGMv2_0942_5_51
Type: CAZyme
Location: 64941 - 66176 (+)
Type: CAZyme
Location: 64941 - 66176 (+)
Gene ID: HRGMv2_0942_5_52
Type: pfam
Location: 66233 - 66910 (+)
Type: pfam
Location: 66233 - 66910 (+)
Gene ID: HRGMv2_0942_5_53
Type: CAZyme
Location: 66785 - 67747 (-)
Type: CAZyme
Location: 66785 - 67747 (-)
Gene ID: HRGMv2_0942_5_54
Type: TC
Location: 67870 - 68712 (+)
Type: TC
Location: 67870 - 68712 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958348565
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0942_5_46 | vegetarian > omnivore | 1.37205 | 0.03469 |
| HRGMv2_0942_5_46 | vegetarian > vegan | 2.24848 | 0.01170 |
| HRGMv2_0942_5_47 | vegetarian > vegan | 2.45175 | 0.01170 |
| HRGMv2_0942_5_48 | vegetarian > vegan | 2.23651 | 0.01170 |
| HRGMv2_0942_5_50 | vegetarian > omnivore | 2.25848 | 0.03469 |
| HRGMv2_0942_5_50 | vegetarian > vegan | 5.52355 | 0.01170 |
| HRGMv2_0942_5_51 | vegetarian > omnivore | 1.94145 | 0.03469 |
| HRGMv2_0942_5_51 | vegetarian > vegan | 3.72568 | 0.01170 |