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Cluster: HRGMv2_0942_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0942_4 HRGMv2_0942_4_73 78145 78588 + 4.A.6.1.16
pfam HRGMv2_0942_4 HRGMv2_0942_4_74 78588 78869 + YajC
TC HRGMv2_0942_4 HRGMv2_0942_4_75 78906 79388 + 4.A.6.1.4
TC HRGMv2_0942_4 HRGMv2_0942_4_76 79479 80279 + 4.A.6.1.4
TC HRGMv2_0942_4 HRGMv2_0942_4_77 80269 81351 + 4.A.6.1.4
TF HRGMv2_0942_4 HRGMv2_0942_4_78 81536 82267 + GntR
STP HRGMv2_0942_4 HRGMv2_0942_4_79 82382 83548 + SIS | SIS
CAZyme HRGMv2_0942_4 HRGMv2_0942_4_80 83666 84835 + CE9
Gene ID: HRGMv2_0942_4_73
Type: TC
Location: 78145 - 78588 (+)
Gene ID: HRGMv2_0942_4_74
Type: pfam
Location: 78588 - 78869 (+)
Gene ID: HRGMv2_0942_4_75
Type: TC
Location: 78906 - 79388 (+)
Gene ID: HRGMv2_0942_4_76
Type: TC
Location: 79479 - 80279 (+)
Gene ID: HRGMv2_0942_4_77
Type: TC
Location: 80269 - 81351 (+)
Gene ID: HRGMv2_0942_4_78
Type: TF
Location: 81536 - 82267 (+)
Gene ID: HRGMv2_0942_4_79
Type: STP
Location: 82382 - 83548 (+)
Gene ID: HRGMv2_0942_4_80
Type: CAZyme
Location: 83666 - 84835 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0942_4_74 vegan > omnivore 1.10480 0.00566

🧭 Explore Read Mapping of CGC

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