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Cluster: HRGMv2_0942_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0942_4 HRGMv2_0942_4_40 42767 44167 + GH1
TC HRGMv2_0942_4 HRGMv2_0942_4_41 44288 45631 + 4.A.3.2.2
TC HRGMv2_0942_4 HRGMv2_0942_4_42 45793 46095 + 4.A.3.2.9
TC HRGMv2_0942_4 HRGMv2_0942_4_43 46105 46437 + 4.A.3.2.3
STP HRGMv2_0942_4 HRGMv2_0942_4_44 46679 47632 + Glucokinase
TC HRGMv2_0942_4 HRGMv2_0942_4_45 47876 49735 + 9.B.34.1.2
pfam HRGMv2_0942_4 HRGMv2_0942_4_46 49810 50733 + DHH | DHHA2
TC HRGMv2_0942_4 HRGMv2_0942_4_47 51001 52359 + 2.A.33.1.1
Gene ID: HRGMv2_0942_4_40
Type: CAZyme
Location: 42767 - 44167 (+)
Gene ID: HRGMv2_0942_4_41
Type: TC
Location: 44288 - 45631 (+)
Gene ID: HRGMv2_0942_4_42
Type: TC
Location: 45793 - 46095 (+)
Gene ID: HRGMv2_0942_4_43
Type: TC
Location: 46105 - 46437 (+)
Gene ID: HRGMv2_0942_4_44
Type: STP
Location: 46679 - 47632 (+)
Gene ID: HRGMv2_0942_4_45
Type: TC
Location: 47876 - 49735 (+)
Gene ID: HRGMv2_0942_4_46
Type: pfam
Location: 49810 - 50733 (+)
Gene ID: HRGMv2_0942_4_47
Type: TC
Location: 51001 - 52359 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0942_4_42 vegan > omnivore 1.05968 0.00566

🧭 Explore Read Mapping of CGC

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