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Cluster: HRGMv2_0942_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0942_3 HRGMv2_0942_3_38 46992 48080 - 3.D.1.4.2
pfam HRGMv2_0942_3 HRGMv2_0942_3_39 48086 48802 - Complex1_30kDa
TC HRGMv2_0942_3 HRGMv2_0942_3_40 48802 49386 - 3.D.1.4.2
TC HRGMv2_0942_3 HRGMv2_0942_3_41 49399 52281 - 3.D.1.4.2
TF HRGMv2_0942_3 HRGMv2_0942_3_42 52563 52958 - 0039939
STP HRGMv2_0942_3 HRGMv2_0942_3_43 53413 55443 - Pyr_redox_2
TC HRGMv2_0942_3 HRGMv2_0942_3_44 56117 57097 + 2.A.7.3.62
CAZyme HRGMv2_0942_3 HRGMv2_0942_3_45 57221 58651 + GH1
TC HRGMv2_0942_3 HRGMv2_0942_3_46 58683 60131 + 4.A.1.2.6
Gene ID: HRGMv2_0942_3_38
Type: TC
Location: 46992 - 48080 (-)
Gene ID: HRGMv2_0942_3_39
Type: pfam
Location: 48086 - 48802 (-)
Gene ID: HRGMv2_0942_3_40
Type: TC
Location: 48802 - 49386 (-)
Gene ID: HRGMv2_0942_3_41
Type: TC
Location: 49399 - 52281 (-)
Gene ID: HRGMv2_0942_3_42
Type: TF
Location: 52563 - 52958 (-)
Gene ID: HRGMv2_0942_3_43
Type: STP
Location: 53413 - 55443 (-)
Gene ID: HRGMv2_0942_3_44
Type: TC
Location: 56117 - 57097 (+)
Gene ID: HRGMv2_0942_3_45
Type: CAZyme
Location: 57221 - 58651 (+)
Gene ID: HRGMv2_0942_3_46
Type: TC
Location: 58683 - 60131 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0942_3_46 vegan > omnivore 1.42445 0.00566

🧭 Explore Read Mapping of CGC

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