Cluster: HRGMv2_0942_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0942
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0942_35 | HRGMv2_0942_35_11 | 14152 | 17160 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0942_35 | HRGMv2_0942_35_12 | 17164 | 17619 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0942_35 | HRGMv2_0942_35_13 | 17773 | 19236 | + | 2.A.3.7.4 |
| STP | HRGMv2_0942_35 | HRGMv2_0942_35_14 | 19658 | 19906 | + | PTS-HPr |
| STP | HRGMv2_0942_35 | HRGMv2_0942_35_15 | 20095 | 20337 | + | FeoA |
| TC | HRGMv2_0942_35 | HRGMv2_0942_35_16 | 20377 | 20598 | + | 9.A.8.1.6 |
| TC | HRGMv2_0942_35 | HRGMv2_0942_35_17 | 20722 | 23049 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_0942_35_11
Type: CAZyme
Location: 14152 - 17160 (+)
Type: CAZyme
Location: 14152 - 17160 (+)
Gene ID: HRGMv2_0942_35_12
Type:
Location: 17164 - 17619 (+)
Type:
Location: 17164 - 17619 (+)
Gene ID: HRGMv2_0942_35_13
Type: TC
Location: 17773 - 19236 (+)
Type: TC
Location: 17773 - 19236 (+)
Gene ID: HRGMv2_0942_35_14
Type: STP
Location: 19658 - 19906 (+)
Type: STP
Location: 19658 - 19906 (+)
Gene ID: HRGMv2_0942_35_15
Type: STP
Location: 20095 - 20337 (+)
Type: STP
Location: 20095 - 20337 (+)
Gene ID: HRGMv2_0942_35_16
Type: TC
Location: 20377 - 20598 (+)
Type: TC
Location: 20377 - 20598 (+)
Gene ID: HRGMv2_0942_35_17
Type: TC
Location: 20722 - 23049 (+)
Type: TC
Location: 20722 - 23049 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958348565
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.