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Cluster: HRGMv2_0942_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0942_16 HRGMv2_0942_16_22 21661 22446 - 3.A.1.3.20
TC HRGMv2_0942_16 HRGMv2_0942_16_23 22469 23617 - 3.A.1.3.20
TC HRGMv2_0942_16 HRGMv2_0942_16_24 23627 24553 - 3.A.1.3.20
pfam HRGMv2_0942_16 HRGMv2_0942_16_25 24811 25704 - Aldose_epim
NULL(UNKNOWN) HRGMv2_0942_16 HRGMv2_0942_16_26 25784 26650 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0942_16 HRGMv2_0942_16_27 26911 28140 + 2.A.1.2.25
CAZyme HRGMv2_0942_16 HRGMv2_0942_16_28 28384 29709 + GH4
TC HRGMv2_0942_16 HRGMv2_0942_16_29 29734 31314 + 4.A.1.1.14
TF HRGMv2_0942_16 HRGMv2_0942_16_30 31392 32192 + HTH_6
TC HRGMv2_0942_16 HRGMv2_0942_16_31 32385 33947 - 4.A.1.1.3
CAZyme HRGMv2_0942_16 HRGMv2_0942_16_32 34030 35355 - GH4
Gene ID: HRGMv2_0942_16_22
Type: TC
Location: 21661 - 22446 (-)
Gene ID: HRGMv2_0942_16_23
Type: TC
Location: 22469 - 23617 (-)
Gene ID: HRGMv2_0942_16_24
Type: TC
Location: 23627 - 24553 (-)
Gene ID: HRGMv2_0942_16_25
Type: pfam
Location: 24811 - 25704 (-)
Gene ID: HRGMv2_0942_16_26
Type:
Location: 25784 - 26650 (-)
Gene ID: HRGMv2_0942_16_27
Type: TC
Location: 26911 - 28140 (+)
Gene ID: HRGMv2_0942_16_28
Type: CAZyme
Location: 28384 - 29709 (+)
Gene ID: HRGMv2_0942_16_29
Type: TC
Location: 29734 - 31314 (+)
Gene ID: HRGMv2_0942_16_30
Type: TF
Location: 31392 - 32192 (+)
Gene ID: HRGMv2_0942_16_31
Type: TC
Location: 32385 - 33947 (-)
Gene ID: HRGMv2_0942_16_32
Type: CAZyme
Location: 34030 - 35355 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0942_16_22 vegetarian > vegan 1.01977 0.00290

🧭 Explore Read Mapping of CGC

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