dbCAN Logo

Cluster: HRGMv2_0940_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0940_10 HRGMv2_0940_10_9 9117 9455 - 4.A.3.1.2
TF HRGMv2_0940_10 HRGMv2_0940_10_10 9670 10674 - LacI
TC HRGMv2_0940_10 HRGMv2_0940_10_11 11031 12806 + 4.A.3.1.1
CAZyme HRGMv2_0940_10 HRGMv2_0940_10_12 12872 14311 + GH1
TF HRGMv2_0940_10 HRGMv2_0940_10_13 14501 15511 - LacI
TC HRGMv2_0940_10 HRGMv2_0940_10_14 15787 17565 + 4.A.3.1.1
CAZyme HRGMv2_0940_10 HRGMv2_0940_10_15 17641 19062 + GH1
TF HRGMv2_0940_10 HRGMv2_0940_10_16 19575 20339 - HTH_DeoR
sulfatase HRGMv2_0940_10 HRGMv2_0940_10_17 20544 21596 + S1_4
TC HRGMv2_0940_10 HRGMv2_0940_10_18 21681 22160 - 4.A.6.1.5
pfam HRGMv2_0940_10 HRGMv2_0940_10_19 22657 23130 - DUF386
CAZyme HRGMv2_0940_10 HRGMv2_0940_10_20 23163 24332 - CE9
TF HRGMv2_0940_10 HRGMv2_0940_10_21 24476 25207 - GntR
TC HRGMv2_0940_10 HRGMv2_0940_10_22 25440 26927 - 4.A.1.1.7
Gene ID: HRGMv2_0940_10_9
Type: TC
Location: 9117 - 9455 (-)
Gene ID: HRGMv2_0940_10_10
Type: TF
Location: 9670 - 10674 (-)
Gene ID: HRGMv2_0940_10_11
Type: TC
Location: 11031 - 12806 (+)
Gene ID: HRGMv2_0940_10_12
Type: CAZyme
Location: 12872 - 14311 (+)
Gene ID: HRGMv2_0940_10_13
Type: TF
Location: 14501 - 15511 (-)
Gene ID: HRGMv2_0940_10_14
Type: TC
Location: 15787 - 17565 (+)
Gene ID: HRGMv2_0940_10_15
Type: CAZyme
Location: 17641 - 19062 (+)
Gene ID: HRGMv2_0940_10_16
Type: TF
Location: 19575 - 20339 (-)
Gene ID: HRGMv2_0940_10_17
Type: sulfatase
Location: 20544 - 21596 (+)
Gene ID: HRGMv2_0940_10_18
Type: TC
Location: 21681 - 22160 (-)
Gene ID: HRGMv2_0940_10_19
Type: pfam
Location: 22657 - 23130 (-)
Gene ID: HRGMv2_0940_10_20
Type: CAZyme
Location: 23163 - 24332 (-)
Gene ID: HRGMv2_0940_10_21
Type: TF
Location: 24476 - 25207 (-)
Gene ID: HRGMv2_0940_10_22
Type: TC
Location: 25440 - 26927 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0940_10_21 vegetarian > vegan 3.42665 0.02517

🧭 Explore Read Mapping of CGC

← Back to Cluster List