Cluster: HRGMv2_0940_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0940
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0940_3 | HRGMv2_0940_3_6 | 4541 | 6028 | - | GH1 |
| TC | HRGMv2_0940_3 | HRGMv2_0940_3_7 | 6114 | 6455 | - | 4.A.3.2.1 |
| TC | HRGMv2_0940_3 | HRGMv2_0940_3_8 | 6458 | 6754 | - | 4.A.3.2.6 |
| TC | HRGMv2_0940_3 | HRGMv2_0940_3_9 | 6803 | 8095 | - | 4.A.3.2.2 |
| pfam | HRGMv2_0940_3 | HRGMv2_0940_3_10 | 8250 | 9017 | - | YdjC |
| TF | HRGMv2_0940_3 | HRGMv2_0940_3_11 | 9306 | 10127 | + | HTH_6 |
| CAZyme | HRGMv2_0940_3 | HRGMv2_0940_3_12 | 10148 | 11536 | - | GH1 |
Gene ID: HRGMv2_0940_3_6
Type: CAZyme
Location: 4541 - 6028 (-)
Type: CAZyme
Location: 4541 - 6028 (-)
Gene ID: HRGMv2_0940_3_7
Type: TC
Location: 6114 - 6455 (-)
Type: TC
Location: 6114 - 6455 (-)
Gene ID: HRGMv2_0940_3_8
Type: TC
Location: 6458 - 6754 (-)
Type: TC
Location: 6458 - 6754 (-)
Gene ID: HRGMv2_0940_3_9
Type: TC
Location: 6803 - 8095 (-)
Type: TC
Location: 6803 - 8095 (-)
Gene ID: HRGMv2_0940_3_10
Type: pfam
Location: 8250 - 9017 (-)
Type: pfam
Location: 8250 - 9017 (-)
Gene ID: HRGMv2_0940_3_11
Type: TF
Location: 9306 - 10127 (+)
Type: TF
Location: 9306 - 10127 (+)
Gene ID: HRGMv2_0940_3_12
Type: CAZyme
Location: 10148 - 11536 (-)
Type: CAZyme
Location: 10148 - 11536 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.