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Cluster: HRGMv2_0939_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0939_17 HRGMv2_0939_17_11 9724 10167 + 4.A.6.1.16
pfam HRGMv2_0939_17 HRGMv2_0939_17_12 10167 10448 + YajC
TC HRGMv2_0939_17 HRGMv2_0939_17_13 10485 10967 + 4.A.6.1.4
TC HRGMv2_0939_17 HRGMv2_0939_17_14 11058 11858 + 4.A.6.1.4
TC HRGMv2_0939_17 HRGMv2_0939_17_15 11848 12930 + 4.A.6.1.4
TF HRGMv2_0939_17 HRGMv2_0939_17_16 13116 13847 + GntR
STP HRGMv2_0939_17 HRGMv2_0939_17_17 13962 15128 + SIS | SIS
CAZyme HRGMv2_0939_17 HRGMv2_0939_17_18 15246 16415 + CE9
Gene ID: HRGMv2_0939_17_11
Type: TC
Location: 9724 - 10167 (+)
Gene ID: HRGMv2_0939_17_12
Type: pfam
Location: 10167 - 10448 (+)
Gene ID: HRGMv2_0939_17_13
Type: TC
Location: 10485 - 10967 (+)
Gene ID: HRGMv2_0939_17_14
Type: TC
Location: 11058 - 11858 (+)
Gene ID: HRGMv2_0939_17_15
Type: TC
Location: 11848 - 12930 (+)
Gene ID: HRGMv2_0939_17_16
Type: TF
Location: 13116 - 13847 (+)
Gene ID: HRGMv2_0939_17_17
Type: STP
Location: 13962 - 15128 (+)
Gene ID: HRGMv2_0939_17_18
Type: CAZyme
Location: 15246 - 16415 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0939_17_12 vegan > omnivore 1.03422 0.00701

🧭 Explore Read Mapping of CGC

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