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Cluster: HRGMv2_0938_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0938_24 HRGMv2_0938_24_7 8563 9963 + GH1
TC HRGMv2_0938_24 HRGMv2_0938_24_8 10084 11436 + 4.A.3.2.2
TC HRGMv2_0938_24 HRGMv2_0938_24_9 11591 11893 + 4.A.3.2.9
TC HRGMv2_0938_24 HRGMv2_0938_24_10 11903 12235 + 4.A.3.2.3
STP HRGMv2_0938_24 HRGMv2_0938_24_11 12477 13430 + Glucokinase
pfam HRGMv2_0938_24 HRGMv2_0938_24_12 13597 14520 + DHH | DHHA2
TC HRGMv2_0938_24 HRGMv2_0938_24_13 14789 16147 + 2.A.33.1.1
Gene ID: HRGMv2_0938_24_7
Type: CAZyme
Location: 8563 - 9963 (+)
Gene ID: HRGMv2_0938_24_8
Type: TC
Location: 10084 - 11436 (+)
Gene ID: HRGMv2_0938_24_9
Type: TC
Location: 11591 - 11893 (+)
Gene ID: HRGMv2_0938_24_10
Type: TC
Location: 11903 - 12235 (+)
Gene ID: HRGMv2_0938_24_11
Type: STP
Location: 12477 - 13430 (+)
Gene ID: HRGMv2_0938_24_12
Type: pfam
Location: 13597 - 14520 (+)
Gene ID: HRGMv2_0938_24_13
Type: TC
Location: 14789 - 16147 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0938_24_9 vegan > omnivore 1.08935 0.00455

🧭 Explore Read Mapping of CGC

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