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Cluster: HRGMv2_0938_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0938_11 HRGMv2_0938_11_5 3298 4719 - GH1
TC HRGMv2_0938_11 HRGMv2_0938_11_6 4796 6574 - 4.A.3.1.1
TF HRGMv2_0938_11 HRGMv2_0938_11_7 6851 7861 + LacI
TC HRGMv2_0938_11 HRGMv2_0938_11_8 8115 9875 - 4.A.3.1.1
CAZyme HRGMv2_0938_11 HRGMv2_0938_11_9 10052 11494 - GH1
TF HRGMv2_0938_11 HRGMv2_0938_11_10 11836 12873 + LacI
CAZyme HRGMv2_0938_11 HRGMv2_0938_11_11 13153 14592 - GH1
TC HRGMv2_0938_11 HRGMv2_0938_11_12 14659 16425 - 4.A.3.1.1
TF HRGMv2_0938_11 HRGMv2_0938_11_13 16783 17787 + LacI
TC HRGMv2_0938_11 HRGMv2_0938_11_14 18001 18339 + 4.A.3.1.2
Gene ID: HRGMv2_0938_11_5
Type: CAZyme
Location: 3298 - 4719 (-)
Gene ID: HRGMv2_0938_11_6
Type: TC
Location: 4796 - 6574 (-)
Gene ID: HRGMv2_0938_11_7
Type: TF
Location: 6851 - 7861 (+)
Gene ID: HRGMv2_0938_11_8
Type: TC
Location: 8115 - 9875 (-)
Gene ID: HRGMv2_0938_11_9
Type: CAZyme
Location: 10052 - 11494 (-)
Gene ID: HRGMv2_0938_11_10
Type: TF
Location: 11836 - 12873 (+)
Gene ID: HRGMv2_0938_11_11
Type: CAZyme
Location: 13153 - 14592 (-)
Gene ID: HRGMv2_0938_11_12
Type: TC
Location: 14659 - 16425 (-)
Gene ID: HRGMv2_0938_11_13
Type: TF
Location: 16783 - 17787 (+)
Gene ID: HRGMv2_0938_11_14
Type: TC
Location: 18001 - 18339 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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