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Cluster: HRGMv2_0938_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0938_2 HRGMv2_0938_2_43 41664 43040 - GH13_20
TC HRGMv2_0938_2 HRGMv2_0938_2_44 43194 44390 - 2.A.1.2.18
TC HRGMv2_0938_2 HRGMv2_0938_2_45 44511 46871 - 9.A.8.1.6
peptidase HRGMv2_0938_2 HRGMv2_0938_2_46 47344 48243 - S09.UPW
TC HRGMv2_0938_2 HRGMv2_0938_2_47 48488 49051 + 4.A.1.2.6
pfam HRGMv2_0938_2 HRGMv2_0938_2_48 49233 50636 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0938_2 HRGMv2_0938_2_49 50896 51684 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0938_2 HRGMv2_0938_2_50 51845 52825 + 3.A.1.34.1
TC HRGMv2_0938_2 HRGMv2_0938_2_51 53029 53952 + 3.A.1.34.1
TC HRGMv2_0938_2 HRGMv2_0938_2_52 53945 54739 + 3.A.1.34.1
Gene ID: HRGMv2_0938_2_43
Type: CAZyme
Location: 41664 - 43040 (-)
Gene ID: HRGMv2_0938_2_44
Type: TC
Location: 43194 - 44390 (-)
Gene ID: HRGMv2_0938_2_45
Type: TC
Location: 44511 - 46871 (-)
Gene ID: HRGMv2_0938_2_46
Type: peptidase
Location: 47344 - 48243 (-)
Gene ID: HRGMv2_0938_2_47
Type: TC
Location: 48488 - 49051 (+)
Gene ID: HRGMv2_0938_2_48
Type: pfam
Location: 49233 - 50636 (+)
Gene ID: HRGMv2_0938_2_49
Type:
Location: 50896 - 51684 (+)
Gene ID: HRGMv2_0938_2_50
Type: TC
Location: 51845 - 52825 (+)
Gene ID: HRGMv2_0938_2_51
Type: TC
Location: 53029 - 53952 (+)
Gene ID: HRGMv2_0938_2_52
Type: TC
Location: 53945 - 54739 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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