dbCAN Logo

Cluster: HRGMv2_0938_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0938_43 HRGMv2_0938_43_6 5229 6398 - CE9
STP HRGMv2_0938_43 HRGMv2_0938_43_7 6516 7682 - SIS | SIS
TF HRGMv2_0938_43 HRGMv2_0938_43_8 7797 8528 - GntR
TC HRGMv2_0938_43 HRGMv2_0938_43_9 8714 9796 - 4.A.6.1.4
TC HRGMv2_0938_43 HRGMv2_0938_43_10 9786 10586 - 4.A.6.1.4
TC HRGMv2_0938_43 HRGMv2_0938_43_11 10677 11159 - 4.A.6.1.4
pfam HRGMv2_0938_43 HRGMv2_0938_43_12 11196 11477 - YajC
TC HRGMv2_0938_43 HRGMv2_0938_43_13 11477 11920 - 4.A.6.1.16
Gene ID: HRGMv2_0938_43_6
Type: CAZyme
Location: 5229 - 6398 (-)
Gene ID: HRGMv2_0938_43_7
Type: STP
Location: 6516 - 7682 (-)
Gene ID: HRGMv2_0938_43_8
Type: TF
Location: 7797 - 8528 (-)
Gene ID: HRGMv2_0938_43_9
Type: TC
Location: 8714 - 9796 (-)
Gene ID: HRGMv2_0938_43_10
Type: TC
Location: 9786 - 10586 (-)
Gene ID: HRGMv2_0938_43_11
Type: TC
Location: 10677 - 11159 (-)
Gene ID: HRGMv2_0938_43_12
Type: pfam
Location: 11196 - 11477 (-)
Gene ID: HRGMv2_0938_43_13
Type: TC
Location: 11477 - 11920 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0938_43_12 vegan > omnivore 1.06234 0.00455

🧭 Explore Read Mapping of CGC

← Back to Cluster List