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Cluster: HRGMv2_0936_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0936_4 HRGMv2_0936_4_23 23305 23748 + 4.A.6.1.16
pfam HRGMv2_0936_4 HRGMv2_0936_4_24 23748 24029 + YajC
TC HRGMv2_0936_4 HRGMv2_0936_4_25 24066 24548 + 4.A.6.1.4
TC HRGMv2_0936_4 HRGMv2_0936_4_26 24639 25439 + 4.A.6.1.4
TC HRGMv2_0936_4 HRGMv2_0936_4_27 25429 26511 + 4.A.6.1.4
TF HRGMv2_0936_4 HRGMv2_0936_4_28 26697 27428 + GntR
STP HRGMv2_0936_4 HRGMv2_0936_4_29 27543 28709 + SIS | SIS
CAZyme HRGMv2_0936_4 HRGMv2_0936_4_30 28828 29997 + CE9
Gene ID: HRGMv2_0936_4_23
Type: TC
Location: 23305 - 23748 (+)
Gene ID: HRGMv2_0936_4_24
Type: pfam
Location: 23748 - 24029 (+)
Gene ID: HRGMv2_0936_4_25
Type: TC
Location: 24066 - 24548 (+)
Gene ID: HRGMv2_0936_4_26
Type: TC
Location: 24639 - 25439 (+)
Gene ID: HRGMv2_0936_4_27
Type: TC
Location: 25429 - 26511 (+)
Gene ID: HRGMv2_0936_4_28
Type: TF
Location: 26697 - 27428 (+)
Gene ID: HRGMv2_0936_4_29
Type: STP
Location: 27543 - 28709 (+)
Gene ID: HRGMv2_0936_4_30
Type: CAZyme
Location: 28828 - 29997 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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