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Cluster: HRGMv2_0936_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0936_1 HRGMv2_0936_1_11 15581 16957 - GH13_20
TC HRGMv2_0936_1 HRGMv2_0936_1_12 17111 18307 - 2.A.1.2.18
TC HRGMv2_0936_1 HRGMv2_0936_1_13 18428 20788 - 9.A.8.1.6
peptidase HRGMv2_0936_1 HRGMv2_0936_1_14 21262 22161 - S09.UPW
TC HRGMv2_0936_1 HRGMv2_0936_1_15 22405 22968 + 4.A.1.2.6
pfam HRGMv2_0936_1 HRGMv2_0936_1_16 23150 24553 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0936_1 HRGMv2_0936_1_17 24812 25597 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0936_1 HRGMv2_0936_1_18 25758 26738 + 3.A.1.34.1
TC HRGMv2_0936_1 HRGMv2_0936_1_19 26942 27865 + 3.A.1.34.1
TC HRGMv2_0936_1 HRGMv2_0936_1_20 27858 28652 + 3.A.1.34.1
Gene ID: HRGMv2_0936_1_11
Type: CAZyme
Location: 15581 - 16957 (-)
Gene ID: HRGMv2_0936_1_12
Type: TC
Location: 17111 - 18307 (-)
Gene ID: HRGMv2_0936_1_13
Type: TC
Location: 18428 - 20788 (-)
Gene ID: HRGMv2_0936_1_14
Type: peptidase
Location: 21262 - 22161 (-)
Gene ID: HRGMv2_0936_1_15
Type: TC
Location: 22405 - 22968 (+)
Gene ID: HRGMv2_0936_1_16
Type: pfam
Location: 23150 - 24553 (+)
Gene ID: HRGMv2_0936_1_17
Type:
Location: 24812 - 25597 (+)
Gene ID: HRGMv2_0936_1_18
Type: TC
Location: 25758 - 26738 (+)
Gene ID: HRGMv2_0936_1_19
Type: TC
Location: 26942 - 27865 (+)
Gene ID: HRGMv2_0936_1_20
Type: TC
Location: 27858 - 28652 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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